Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 235 7e-57 seq7 127 2e-24 >seq5 Length=22804910 Score = 235 bits (260), Expect = 7e-57 Identities = 596/890 (67%), Gaps = 16/890 (2%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||| || || ||||| || | ||||| ||||||||||| || |||| ||| || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT-CCCAATT-CAGAA 23960 ||||| |||| | ||||| | ||| ||| | |||| || ||||| || | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACA--CTTTACCATACCCAAGCGCACAT 2412136 Query 23961 ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATA 24020 | ||| ||||| || |||||||| ||||| |||||| ||||| |||||| || | Sbjct 2412137 AACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACC 2412196 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 | | ||||| || || | ||| ||| ||||| ||||| || | | Sbjct 2412197 AACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACA 2412256 Query 24081 ATAGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACAT 24137 ||||| | ||| |||| ||||| | | | ||| || | | || |||| ||||||| Sbjct 2412257 ATAGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAA 2412313 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 |||||||| ||||||| ||| |||||||| ||||||||||| || || || | || Sbjct 2412314 GCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCA 2412373 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || ||||| || |||||||| || || || || || ||||| ||||| || Sbjct 2412374 GGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATA 2412433 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTC-TCCATAACCGGCGCTGTCATGTATCCA 24316 ||||| || || || || | | | ||| | | | | | ||| ||||| Sbjct 2412434 CCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGAT-CCATCGATCCA 2412492 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 | |||||| || ||||| | |||||||| || || || || ||| || || Sbjct 2412493 AGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAG 2412552 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 || | | |||| || ||||||| | || || || | | |||| |||||| || || Sbjct 2412553 ATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGA 2412612 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 ||| || || ||||| || ||||| ||||||||||| | || |||| | ||||| Sbjct 2412613 ATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTAC 2412672 Query 24497 TTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||| ||| |||||| || | ||||| || ||||||||| || || || | Sbjct 2412673 ATCT-GACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGA 2412731 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTG 24614 | || | ||| ||||| || || | ||| || | ||| || || | ||| ||| | Sbjct 2412732 AAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGG 2412790 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 | |||| || | ||| |||||||| ||||||| |||||||| || || || || ||| Sbjct 2412791 TTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTAC 2412850 Query 24675 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 || | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 2412851 ATTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGG 2412900 >seq7 Length=29178675 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| || | |||| | || |||| ||| |||| |||||| Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| ||| | ||||| || || ||||| |||||| | ||||| |||||| ||| || Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| |||||||||||| |||| || ||||| |||||| Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593515496968080