Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq8 93.3 4e-14 seq6 86.0 5e-12 seq4 84.2 2e-11 >seq7 Length=29178675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | || || ||||| |||||| ||| || | | Sbjct 2570841 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570900 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| | | | ||| | ||| || || ||||| ||||| | || ||| | Sbjct 2570901 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 2570960 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| || || |||||||| || ||||| || || ||| || || || || |||||| Sbjct 2570961 ACAGAGGCTCATCTTTGCTGGTAAACAGCTCGAGGATGGTCGAACCCTTGGG--GATTAC 2571018 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| ||||| || ||||| |||| || |||| || Sbjct 2571019 AATATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 2571068 >seq8 Length=40886855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | || || | || || |||||||||||| || ||| | || Sbjct 1188846 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 1188787 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| || ||| || || ||||| | || ||||| Sbjct 1188786 GACACAATAGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 1188727 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||| || || || ||||| |||||| | ||| | || |||||||| Sbjct 1188726 CAGAGACTTATCTTCGCCGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1188667 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| |||||||| |||| Sbjct 1188666 ATCCAGAAGGAATCGACTCTTCATTTGGT 1188638 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | ||||| | || || || ||||| || ||| || | | Sbjct 1190283 ATGCAAATATTCGTGAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1190224 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| || || || |||||| | || ||||| Sbjct 1190223 GACACTATCGATAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAG 1190164 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||||||||| || || || ||||| |||||| | ||| | ||||| |||||| Sbjct 1190163 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCCGACTACAAT 1190104 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || || | ||| |||| | ||||| |||| || Sbjct 1190103 ATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1190057 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||| || ||| | ||||| || || || ||| ||||| Sbjct 13447032 GATAAGGAAGGGATTCCTCCGGATCAGCAGAGATTGATCTTCGCTGGTAAGCAATTGGAA 13447091 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| ||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 13447092 GATGGGCGTACCTTGGCGGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTGTTG 13447151 Query 29175 CG 29176 || Sbjct 13447152 CG 13447153 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||||||||| |||||||| ||| ||| | | Sbjct 13447395 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCC 13447454 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| || || ||||| ||| | || || || Sbjct 13447455 GATACTATTGATAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 13447514 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | ||||| || || || || || ||||| || |||| |||| |||||||| Sbjct 13447515 CAGAGATTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 13447574 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||||||| ||||||| || |||| || || Sbjct 13447575 ATCCAGAAAGAGAGTACTCTTCATTTGGTGTTGCGTCTACGTGGTGG 13447621 >seq4 Length=23266485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | || || |||| ||||||| ||| || || Sbjct 5744347 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAATCATTACCCTAGAAGTTGAGAGTTCA 5744406 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || ||| ||||||||||| | || || ||| Sbjct 5744407 GATACAATTGACAACGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAA 5744466 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || ||||||||||| ||||| || |||||| ||| | || || ||||| Sbjct 5744467 CAAAGGCTAATCTTTGCGGGTAAACAGCTCGAAGATGGTTGTACTCTTGCGGACTACAAC 5744526 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 5744527 ATCCAGAAGGAATCAACCCTCCACTTGGT 5744555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428191025799005