Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq11221 104 3e-17 seq8665 104 3e-17 seq3 98.7 1e-15 seq7 95.1 1e-14 seq8 91.5 2e-13 >seq6 Length=37079636 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||||||||||||||| | || ||||| || || || |||||||||||| Sbjct 13447621 CCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCC 13447562 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | |||| || ||||||||||| ||||| || | || ||||||||| | || Sbjct 13447561 AAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 13447502 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||| ||||| ||| ||| || | | | | || ||| ||| || Sbjct 13447501 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAACT 13447442 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| |||||||| | ||||| |||||||| ||||| Sbjct 13447441 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Score = 113 bits (124), Expect = 5e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||||| || |||||| |||||| ||||||||||| ||||||| |||||| | Sbjct 13448130 ACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCCAAAGTCCGACC 13448071 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || ||||| ||||||||||| | || | | |||||| Sbjct 13448070 ATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTT 13448011 Query 43088 GTCCATGATTTT 43099 |||| ||| || Sbjct 13448010 GTCCTGGATCTT 13447999 Score = 102 bits (112), Expect = 9e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| |||||||| ||||||||| |||||||| ||||||| || || | Sbjct 13447902 ACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACC 13447843 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || | | ||||||||| | || | | ||||| Sbjct 13447842 ATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTT 13447783 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || ||| ||| || | ||| | | | ||||| |||| ||||| |||| | Sbjct 13447782 ATCTTGGATCTTTGCCTTCA-CGTTGTCAATAGTGTCAGAGCTC---TCCACCTCGAGAG 13447727 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || | ||||| || ||||||||||| Sbjct 13447726 TAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||||||||||||||| | || ||| || || |||||||| || ||| Sbjct 19969989 CCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCC 19970048 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || || ||||| || ||||| || | || |||||||| | || Sbjct 19970049 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGA 19970108 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||||| |||||| |||| ||| | | | |||||| ||| || Sbjct 19970109 ATACCCTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAAC 19970167 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || | ||||| |||||||| ||||| Sbjct 19970168 TTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || ||||| || ||||||||||| |||| || ||| | Sbjct 13447154 ACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCC 13447095 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||||||||||| || | || |||||| || | || | | ||||| Sbjct 13447094 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTT 13447035 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | || | | | | | | ||| || |||||| |||| |||| Sbjct 13447034 ATCC-TGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGA 13446976 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || || || |||||||| ||||| Sbjct 13446975 TTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || |||||| ||||| ||||| || || | ||||| | Sbjct 19969772 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACC 19969831 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || ||||| ||||||||||| | || | | || || Sbjct 19969832 ATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTT 19969891 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| || |||| ||| | | | ||||| |||| || || |||| | Sbjct 19969892 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCTGAGCTC---TCGACCTCGAGGG 19969947 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || | ||||| || ||||| ||||| Sbjct 19969948 TAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||||| ||| || | || || ||||| ||||||||||| Sbjct 19969568 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 19969627 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | ||||||||| ||| || |||| | Sbjct 19969628 GATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATT 19969687 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | |||||||| || || || || ||||| Sbjct 19969688 GTCAATTGTGTCAGAGCTC---TCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTT 19969744 Query 43169 TACAAAGATTTGCAT 43183 || || || ||||| Sbjct 19969745 CACGAAAATCTGCAT 19969759 >seq11221 Length=395 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 252 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 311 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 312 TACTACCGAGGACTG 326 >seq8665 Length=549 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 217 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 276 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 277 TACTACCGAGGA 288 >seq3 Length=27950219 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||| ||||| || | || ||||||||| || |||||||||||| Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| || ||||| ||||| || || || || | || ||||| | || Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || ||||| ||| || |||| | | || |||||| ||| || Sbjct 5226942 ATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACC 5227001 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| |||||||| || || || || ||||||||||| Sbjct 5227002 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||| | ||| | ||| |||||| || || || || ||||| Sbjct 16879381 CCACCTCCGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCAGCG 16879322 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||||||||| ||||||||||||| ||||| ||| | || Sbjct 16879321 AGTGTCCTTCCATCTTCAAGCTGCTTACCGGCGAATATGAGTCTCTGCTCGTCCGGTGGG 16879262 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| ||| | | | |||||| ||| || Sbjct 16879261 ATTCATTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATAGTGTCGAAGCTTTCAAC 16879203 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| | | ||||| ||||| || ||||| Sbjct 16879202 TTCGAGGGTAATGGTCTTGCCTATCAAAGTCTTCACAAAAATCTGCAT 16879155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| ||||||||||| || ||||| || | || || ||||| ||||||||||| Sbjct 5226333 CTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAA 5226392 Query 43052 TATGAGTCGCTGCTGGTC 43069 ||| |||| ||| ||||| Sbjct 5226393 TATAAGTCTCTGTTGGTC 5226410 >seq7 Length=29178675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| ||||| | ||||||||||| || ||||| |||||||||||||| | Sbjct 2571069 TCCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCC 2571010 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || ||||| |||||||| || ||||| | ||| | ||| | || Sbjct 2571009 AAGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGG 2570950 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTC---GCTCGATT 43131 | | ||||| || ||| || |||| ||||| || | |||| |||| | Sbjct 2570949 GATCCCTTCCTTATCTTGGATCTTCGCCTTGA-CGTCGTCAATGCTGTCTGAGCTC---T 2570894 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || | || || ||||| || || || || || ||||| ||||||||| Sbjct 2570893 CAACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570841 >seq8 Length=40886855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | ||||| ||||| || |||||| || |||||||| || || Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | || || || |||||||||||||| || |||| ||||| || | || Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 1190177 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTC---TCG 1190233 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || ||||| || || || || || || || || |||||||| Sbjct 1190234 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | || | |||| ||| || || || |||||||| || ||||||| | Sbjct 1189840 ACGCAAGACAAGGTGGAGTGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTCCTTCC 1189899 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||||||||||||||| || |||| ||||| || | || | | ||| || Sbjct 1189900 ATCTTCAAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTT 1189959 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | || ||| ||| || || | || || Sbjct 1189960 GTCCTGGATCTTAGCCTTGACATTATCAATAGTATCGGAGCTTTCAACCTCAAGAGTAAT 1190019 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || | ||||| |||||||||||||| Sbjct 1190020 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 1190055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571619100667880