Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 seq3 98.7 1e-15 seq1 96.9 5e-15 seq8 86.0 9e-12 seq4 86.0 9e-12 >seq6 Length=37079636 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||||||| | |||||| ||||| ||||| || || | |||||||||| || Sbjct 19970004 AACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCCAGAGTTCTGCCGTCC 19970063 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | ||| ||||| || ||||||||||||||||| ||||||||||| || ||||| || Sbjct 19970064 TCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCC 19970123 Query 146186 TG 146187 || Sbjct 19970124 TG 19970125 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||| || || || ||||| ||||| | Sbjct 19970445 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 19970504 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || || || |||||||| || |||||||| ||||||||||||||| Sbjct 19970505 AAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 19970564 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||| || |||||||| Sbjct 19970565 ATTCCCTCCTTATCTTG 19970581 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | || |||||||| | || ||||| || || |||||||| | | Sbjct 33565310 CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCA 33565251 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||||||||||||| || | ||| || || |||||||| Sbjct 33565250 AGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 33565191 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 33565190 ATCCCTTCCTTGTCTTG 33565174 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | || ||||| || | ||| ||||| || ||||| ||||| | Sbjct 13447165 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCC 13447106 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || ||||| || ||||| || |||||||| ||||||||||||||| Sbjct 13447105 AAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 13447046 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 13447045 ATCCCTTCCTTATCCTG 13447029 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | || | ||| | |||||| || || ||||| ||||| | | Sbjct 13447393 CCACCACGAAGCCTGAGCACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCA 13447334 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || | || |||||||| || ||||| || ||||||||||||||| Sbjct 13447333 AGAGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGAGGA 13447274 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 13447273 ATACCTTCCTTATCTTG 13447257 >seq3 Length=27950219 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | || |||||||| | || ||||| ||| || |||||||| | | Sbjct 14806201 CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTATGAATGTTATAATCCGCA 14806142 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || | ||||||||||||||| || | ||| || | |||||||| Sbjct 14806141 AGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTAGTCCGGAGGG 14806082 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 14806081 ATTCCTTCCTTGTCTTG 14806065 >seq1 Length=25238555 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | || || |||||||| | || |||||||| || | ||||| | Sbjct 18011472 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGC 18011413 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | || |||||||||||||| ||||| ||||| | ||| || ||||| || Sbjct 18011412 GAGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGG 18011353 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 18011352 AATTCCTTCCTTGTCTTG 18011335 >seq8 Length=40886855 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || || || || || || ||||| || || | | Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||| || ||||| || || | ||||||||||||||||||| Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 1190177 ATACCTTCCTTGTCCTG 1190193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | |||||||| | ||| ||||| || || || ||||| | Sbjct 1188618 TTCCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCG 1188677 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||| || | ||| || | ||| || || || || || | ||| ||||||||||||| Sbjct 1188678 CAAGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAG 1188737 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || || || Sbjct 1188738 GAATCCCTTCCTTGTCCTG 1188756 >seq4 Length=23266485 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || || || | ||| | |||||| ||||| || || ||||| Sbjct 12669220 GTTCCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCA 12669161 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | |||| | ||| || | ||| || ||||||||||||| || || ||||| || Sbjct 12669160 GCTAAGGTTCGACCATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGT 12669101 Query 146168 GGAATTCCTTCTTTATC 146184 || || |||||||| || Sbjct 12669100 GGTATACCTTCTTTGTC 12669084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743268294104320