Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 2e-15 seq5 84.2 1e-11 >seq6 Length=37079636 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | ||| || ||||| || ||||| || | | Sbjct 19970445 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 19970504 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || ||||||||||| || ||||| || | | |||||| || || Sbjct 19970505 AAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 19970564 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | | |||| || | ||| || Sbjct 19970565 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 19970624 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || |||||||||||||||||||||||||||||| Sbjct 19970625 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 19970672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| ||| ||||| || ||||| || | | Sbjct 13447165 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCC 13447106 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || ||||| ||||| || ||||| || | | |||||| || || Sbjct 13447105 AAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 13447046 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| |||||| || | | |||| ||| | ||| || Sbjct 13447045 ATCCCTTCCTTATCCTGAATCTTC-GCTTTAACATTGTCGATCGTATCAGAACTTTCCAC 13446987 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || |||||||||||||||||||||||||||||| Sbjct 13446986 CTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 13446938 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| || | |||||| |||||||| |||||||| || | | Sbjct 13447621 CCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCC 13447562 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | | |||| || | |||||| || ||||| || | | ||||||||| || Sbjct 13447561 AAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 13447502 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| |||||| ||| | || | || | ||||| ||| || Sbjct 13447501 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAACT 13447442 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| ||||| || | || || |||||||||||||| Sbjct 13447441 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 >seq5 Length=22804910 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| | || ||| |||| || | || || || ||||| Sbjct 22133769 TTCTTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCAGCGAA 22133710 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | || |||||||| || | | |||||||| ||||| ||||| | || Sbjct 22133709 GATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG-GCTTTGACAT 22133651 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | ||| | ||||| || || | ||||| || || || || || ||||||| Sbjct 22133650 TGTCGATGGTATCTGATGATTCAACCTCGAGAGTGATTGTCTTCCCCGTTAGGGTTTTCA 22133591 Query 34377 CAAAGATCTGCATCGCTCGA 34396 | |||||||||||| || || Sbjct 22133590 CGAAGATCTGCATCTCTTGA 22133571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322962653353760