Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 242 3e-59 >seq5 Length=22804910 Score = 242 bits (268), Expect = 3e-59 Identities = 597/892 (67%), Gaps = 25/892 (3%) Strand=Plus/Plus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 |||||| || ||| ||||| |||| ||||||||||||||| ||||| || || |||| Sbjct 2412007 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTG 2412066 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCC 16050 ||| ||| ||||| ||||||||||||| | || ||| |||| | | || Sbjct 2412067 TAAACTAATCAACTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATA-CC 2412125 Query 16051 CAATTCCA-ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 ||| || | || || |||||||| ||||| || |||||||| |||| || |||| | Sbjct 2412126 CAAGCGCACATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCAT 2412185 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || | || | ||| | ||||| || ||| | | | || || | ||||| Sbjct 2412186 TCATACCAACCAACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCG 2412245 Query 16170 CTTC--AATGATTATAT----CTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTT 16223 | || || | || | ||||| | ||||| | | | ||| | | || Sbjct 2412246 CATCGCAAACAATAGACTTCACTCTTTCCTCACTAAGCTTGGTACG---TAACA-GAGTG 2412301 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 |||| | | |||||| |||||||| || || |||||||| || ||||| ||||| | Sbjct 2412302 TAAA--TCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAG 2412359 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 | || || | ||| ||||| ||||| ||||| |||| ||| || || | || |||| Sbjct 2412360 AGAAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAAC 2412419 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 |||| ||||||||||||||||| || || || || | || ||| || | ||| | Sbjct 2412420 CAGAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAG 2412479 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 | | || ||||| | ||||||| ||||| | ||||||| || | | Sbjct 2412480 AT---CCATCGATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTT 2412536 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | |||||| |||| || || | |||||||| ||||| || ||||| || | || | Sbjct 2412537 CGATTGCACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAA 2412596 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTA 16582 | |||||| |||||||| |||||||| || || || || || || || || ||| | Sbjct 2412597 GAGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGC 2412655 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 |||||||| | |||||| || || || | | || | ||||||| || ||||| Sbjct 2412656 GCTTCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCG 2412715 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA---AtttttttCGTTATCTGAA 16699 || || || || || || |||| |||||| || || | || | ||| | || Sbjct 2412716 TCAGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TG-- 2412772 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAA 16759 || ||| ||||||| |||| ||| | ||| || ||||| | ||||| || || Sbjct 2412773 AGATTTTCCCAGTCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGAT 2412832 Query 16760 GCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACA 16811 || | || || || ||||||| ||| || | | ||| ||| ||||||| Sbjct 2412833 GCTTCGGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACA 2412884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462351444740600