Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq8 89.7 4e-13 seq7 89.7 4e-13 seq1 82.4 6e-11 >seq6 Length=37079636 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || ||||| |||||||| || Sbjct 19970252 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGTTGCTTTCCGGCAAA 19970311 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || ||||| | ||||||||||| || || |||||| Sbjct 19970312 GATCAACCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTT 19970371 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | |||||| ||||| || |||| ||||| || Sbjct 19970372 ATCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATAGTCTTACCAGTCAAGGTCTTAAC 19970431 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 19970432 GAAGATCTGCAT 19970443 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| || || || ||| ||||| || ||||||||| ||| | |||| Sbjct 19970004 AACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCCAGAGTTCTGCCGTCC 19970063 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || ||||| ||||||||||| ||||| | || ||||| ||||| | |||||| |||||| Sbjct 19970064 TCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCC 19970123 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | | |||| | || || |||| ||| || ||| Sbjct 19970124 TGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGATGGTC 19970183 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| |||||||| ||||| Sbjct 19970184 TTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | || ||||| ||||| || |||||||||||||| || || Sbjct 33565310 CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCA 33565251 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || ||||||||||| || || || | | ||||||||| ||||| Sbjct 33565250 AGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 33565191 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| || ||| || | | | |||| | ||| || Sbjct 33565190 ATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACT 33565131 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || || || || ||||||||||| ||||| Sbjct 33565130 TCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || |||||| || || |||||||| || ||| | || Sbjct 13447898 AACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACCATCC 13447839 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||||| ||| ||||| || || | ||| ||||| || Sbjct 13447838 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTTATCT 13447779 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | |||| | ||||||||| | ||||| ||| Sbjct 13447778 TGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCACCTCGAGAGTAATGGTC 13447719 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| ||||| || ||||||||||| Sbjct 13447718 TTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| |||| || || || ||||| ||||| Sbjct 13447358 CTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCGTCCTCAAGCTGCTTTCCAGCGAA 13447299 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || ||||| | ||| ||||| || ||| || || || Sbjct 13447298 GATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATCTTAGCTTTCACGTT 13447239 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||| ||||| | ||||| || || || |||| |||||||| Sbjct 13447238 ATCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATAGTTTTACCAGTCAAGGTCTTCAC 13447179 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 13447178 AAAGATCTGCAT 13447167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| || ||||| || || || | || ||| Sbjct 19970463 ACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGGCCATCTTCC 19970522 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || ||||| ||||| ||||| | ||| || || ||||| | |||||||| || Sbjct 19970523 AACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTTATCTTGG 19970582 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | |||| || |||||||| | ||| || ||||| Sbjct 19970583 ATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAGTCTTT 19970642 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||||||||| ||||| Sbjct 19970643 CCGGTGAGAGTTTTCACAAAGATCTGCAT 19970671 >seq8 Length=40886855 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | |||||||||| || ||||||||| || ||||||||| Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || || ||||| || || ||||| || | | || || || ||||| Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || ||| |||||| | | |||| | ||| ||| Sbjct 1190177 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACC 1190236 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || || ||||| ||||| || |||||||| Sbjct 1190237 TCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 >seq7 Length=29178675 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | || ||||| ||||| || ||||||||||| ||||| || Sbjct 2571068 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCA 2571009 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || ||||| || || || || | || ||||| ||| ||||| Sbjct 2571008 AGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGG 2570949 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || || || ||| || | | | |||||| | ||| || Sbjct 2570948 ATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACT 2570889 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | |||||| || || || || || || |||||||| |||||||| Sbjct 2570888 TCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCAT 2570842 >seq1 Length=25238555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || || ||||| || ||||| ||| ||||||||||||||||| Sbjct 21980172 CCACCCCTAAGCCTCAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCCGCT 21980231 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || |||||||| || || || ||||| | |||||| || || || Sbjct 21980232 AGTGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGT 21980291 Query 45230 ACACCCTCCTTGTCC 45244 | ||||| |||||| Sbjct 21980292 ATTCCCTCTTTGTCC 21980306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394941483218191