Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 163 3e-35 >seq5 Length=22804910 Score = 163 bits (180), Expect = 3e-35 Identities = 555/855 (65%), Gaps = 21/855 (2%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| |||||||| || ||||| || |||| || | || | Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTT---GTAAACTAAT 2412075 Query 13972 T---TCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTA 14027 ||||| ||||||| ||||| | ||| | |||||||| || | || || | Sbjct 2412076 CAACTCCATCCAATCAAAAGGATTACTC-ACACCATACACTTTACCATACCCAAGCGCAC 2412134 Query 14028 ATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 14087 ||| || |||||||||| ||||||||||| ||| ||| || |||| ||||||||| | Sbjct 2412135 ATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAA 2412194 Query 14088 TTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 14147 | ||||| | || ||| ||| | || || || || ||| | Sbjct 2412195 CCAACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAA 2412254 Query 14148 TAATAATCGTAATAATTTCATTAG-AAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 14206 |||| | | | |||| | | ||| | || | | | | | |||| ||||| Sbjct 2412255 CAATAGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACA-GAGTGTAAATCAAACAA 2412313 Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 || |||||||| || | || || ||||| || | |||||| || || ||||| || Sbjct 2412314 GCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCA 2412373 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 ||||| | ||| ||||| || | ||| || || | | ||| || || || |||||||| Sbjct 2412374 GGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATA 2412433 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--A 14384 || ||||| ||| ||||||| | ||||| | || | ||| | || || | Sbjct 2412434 CCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGA 2412488 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 |||| | |||||||| || ||| || ||| | || || ||||| || ||| | Sbjct 2412489 TCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGA 2412548 Query 14445 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14504 ||| ||| || | ||||| || | ||||| || || | ||| | |||||| | Sbjct 2412549 ATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCT 2412608 Query 14505 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14564 | || || || || || ||||| || || || || || || | ||||| || || Sbjct 2412609 CTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTT 2412668 Query 14565 GTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14624 |||| ||||| |||| | || | ||||| || || || ||| || || | Sbjct 2412669 GTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGA 2412728 Query 14625 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC-- 14682 | || || | || || ||| || |||| | ||| | | | |||| |||| ||| || Sbjct 2412729 AGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCAC 2412788 Query 14683 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 || | || | || ||||||||||| || ||||||| || || | ||||| || Sbjct 2412789 GGTTG--TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTT 2412846 Query 14743 ATACATTACCCATAT 14757 |||||| |||| || Sbjct 2412847 GTACATTTCCCAGAT 2412861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482178159754280