Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq4 91.5 1e-13 seq3 86.0 5e-12 seq1 82.4 6e-11 >seq6 Length=37079636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 33565539 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 33565480 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | |||||| |||||| |||| || || || || ||| || Sbjct 33565479 TAATGTCCGACCATCTTCGAGTTGTTTTCCCGCAAAGATTAGCCTCTGCTGGTCCGGAGG 33565420 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 33565419 GATCCCTTCCTTATC 33565405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 33830044 TCCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 33830103 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | |||||| |||||| |||| || || || || ||| || Sbjct 33830104 TAATGTCCGACCATCTTCGAGTTGTTTTCCCGCAAAGATTAGCCTCTGCTGGTCCGGAGG 33830163 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 33830164 GATCCCTTCCTTATC 33830178 >seq4 Length=23266485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| ||| || |||||||| || || ||||||||||| || | || || | Sbjct 5744561 CTGAGAACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCAAGAGTACAACCA 5744502 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| | ||||| |||||| |||| || |||||||| || || | ||||| ||| Sbjct 5744501 TCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGGATTCCTTCTTTA 5744442 Query 18231 TCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || ||| | |||||| | ||| || || ||| ||| | ||| ||| Sbjct 5744441 TCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAACTTCTAGGGTAATG 5744382 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | |||||| ||||| |||||||| Sbjct 5744381 ATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 5738690 TCCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 5738631 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||| || | |||||| || | | |||| || || ||||| |||| || Sbjct 5738630 TAAAGTCCGACCATCCTCTAGTTGTTTTCCGGTAAAGATTAGCCTCTGTTGGTCCAGAGG 5738571 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | ||||| | ||| |||||| | ||| Sbjct 5738570 GATTCCTTCCTTGTCTTGAATCTTCGCCTTGATGTTGTCAATAGTGTCTGAGCTCTCAAC 5738511 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| || |||| || || | || || ||||| || ||||| Sbjct 5738510 TTCTAGGGTAATAGTTTTACCAGTAAGCGTCTTGACAAATATCTGCAT 5738463 >seq3 Length=27950219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | || ||| ||||| ||||| |||||||||||||| || Sbjct 14806415 TCCACCACGGAGACGGAGAACAAGGTTAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGC 14806356 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||| | |||||| |||||| |||| || || || || ||| || Sbjct 14806355 TAATGTCCGACCATCTTCGAGTTGTTTTCCCGCAAAGATTAGCCTCTGCTGGTCCGGAGG 14806296 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 14806295 GATCCCTTCCTTATC 14806281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||||||||| ||||| || ||||| || || Sbjct 5226594 CCACCACGAAGACGAAGAACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCCGCA 5226653 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||||| || ||| |||||||||| ||||| ||| | Sbjct 5226654 AGAGTACGACCATCCTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGTTGGTCCGGAGAG 5226713 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| || | | || ||||| | ||| ||||| | ||| Sbjct 5226714 ATTCCTTCTTTATCTTGGATCT-TGGCTTTGACGTTGTCAATGGTGTCTGAGCTTTCGAC 5226772 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| ||||||| || | ||||| ||||| |||||||| Sbjct 5226773 CTCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 5226820 >seq1 Length=25238555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || || |||| ||||| ||||||||||| || ||| |||| || || Sbjct 18011472 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGC 18011413 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||||| |||||||| || ||| |||| | | |||||| ||| || Sbjct 18011412 GAGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGG 18011353 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 18011352 AATTCCTTCCTTGTC 18011338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379215607585395