Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 seq6 98.7 9e-16 seq4 96.9 3e-15 seq8 82.4 7e-11 >seq5 Length=22804910 Score = 140 bits (154), Expect = 3e-28 Identities = 400/606 (66%), Gaps = 13/606 (2%) Strand=Plus/Minus Query 57537 AGATT-TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||| ||| |||||||| ||| | || ||| | || ||| | |||||||| || || || Sbjct 2412894 AGATTCTGT-ATGTTTCCAATTCACTACCCACAGATCTGGGAAATGTACAAGAAAGCCGA 2412836 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 |||||| || ||||| | |||||||||||| || || | || | || ||||| Sbjct 2412835 AGCATCATTCTGGACAGCCGAAGAAGTAGATCTCTCACAAGACAACCGTGACTGGGAAAA 2412776 Query 57656 CCTCAAAGAATCTGAGA--GAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 ||||| || | |||| | | || || |||||||| | || || ||||||||||| Sbjct 2412775 TCTCAACGA--CGGAGAACGTCACTTCATCAAACACGTACTCGCTTTCTTCGCCGCATCT 2412718 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 || || || || ||| || | | | |||| ||| || ||||| | || Sbjct 2412717 GACGGAATCGTACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGAA 2412658 Query 57774 GCGAGATGC-TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 ||| | ||| || |||||||| ||| | || ||||| || | |||||||| |||||||| Sbjct 2412657 GCGCG-TGCATTCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTC 2412599 Query 57833 GCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGAT 57892 || || |||| || ||| | || || ||| | || | | | || ||| || || Sbjct 2412598 TCTTCTTCTCGACACTTACATCAAAGATAACAAAGAAAGAGATCATCTATTCCGTGCAAT 2412539 Query 57893 CGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGC 57952 |||||| || || | ||||||| || ||| | || | ||||| | | | Sbjct 2412538 CGAAACGATTCCTTGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATCGATGGATC 2412479 Query 57953 -CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTT 58011 || || ||||| || | | | |||||||| || |||||||||||||| | Sbjct 2412478 TCA----AACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCT 2412423 Query 58012 CGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGT 58071 | || ||| | || || ||| | |||||||| || || ||||| || | || | Sbjct 2412422 CTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTAACTT 2412363 Query 58072 TTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 | ||||| || || || | ||||| ||| | || |||||| || || | || | Sbjct 2412362 TCTCTAACGAATTAATCTCAAGAGACGAAGGTTTACACTGTGATTTCGCTTGTTTGATTT 2412303 Query 58132 ACTCTC 58137 || ||| Sbjct 2412302 ACACTC 2412297 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || ||||| |||| |||||| | || Sbjct 22133578 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTTGAATCATCA 22133637 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | || ||||||||||| | || || |||||| Sbjct 22133638 GATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAG 22133697 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| |||||||| ||||| | |||||| ||| | || || ||| Sbjct 22133698 CAACGTTTAATCTTCGCTGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTACAAC 22133757 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || |||||||| || |||||||| || ||| Sbjct 22133758 ATCCAGAAAGAATCAACGCTTCATCTTGTCCTT 22133790 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || ||||| || ||||| | || ||||| || Sbjct 13448143 ATGCAGATTTTCGTGAAGACTCTTACCGGCAAGACAATCACACTTGAAGTTGAGAGCTCT 13448202 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || ||| |||||||| | || || |||||| Sbjct 13448203 GATACTATTGATAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATTCCACCGGACCAG 13448262 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| |||||||| || ||| | || || | || || ||||| ||| Sbjct 13448263 CAGCGTCTAATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGTACACTGGCGGATTACAAC 13448322 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||| || || |||| || Sbjct 13448323 ATTCAGAAAGAGTCGACCCTCCACTTGGTCCT 13448354 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || |||||| | || || || || Sbjct 19969759 ATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAAGTCGAGAGCTCT 19969700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||||||| | || || |||||| Sbjct 19969699 GACACAATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCACCGGACCAG 19969640 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| |||||||| |||||| | || || | ||| || || || ||| Sbjct 19969639 CAGCGTCTAATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTTTGGCTGACTACAAC 19969580 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || |||| || Sbjct 19969579 ATCCAGAAGGAGTCTACTCTCCACTTGGTCCT 19969548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || || ||| |||| || || || Sbjct 19969987 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTCGAGAGCTCA 19969928 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || |||||| ||||| | || || |||||| Sbjct 19969927 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCTCCGGACCAG 19969868 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || | ||| | ||| || ||| Sbjct 19969867 CAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACCTTAGCCGACTACAAC 19969808 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||| |||| Sbjct 19969807 ATTCAGAAGGAGTCGACCCTTCACTTGGT 19969779 >seq4 Length=23266485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || ||||| || |||||||| |||| |||||| Sbjct 22703433 CAAAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAAT 22703374 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | |||| | ||||| | || ||||||||||| | || || | Sbjct 22703373 CATCCGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 22703314 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || || || |||| ||||| || ||||| | |||||| ||| || || | Sbjct 22703313 ATCAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTGGCTGACT 22703254 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || || ||||| || |||||||| || ||| Sbjct 22703253 ACAACATCCAGAAGGAATCAACGCTTCATCTCGTCCTT 22703216 >seq8 Length=40886855 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| || ||| | || || || || Sbjct 1188846 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 1188787 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||||||||| | || || || ||| Sbjct 1188786 GACACAATAGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 1188727 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || || | ||||| | |||| | ||||| ||| Sbjct 1188726 CAGAGACTTATCTTCGCCGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1188667 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||||||||||||| |||| ||| Sbjct 1188666 ATCCAGAAGGAATCGACTCTTCATTTGGTTCTT 1188634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445611657766320