Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 152 1e-31 seq2 118 2e-21 >seq7 Length=29178675 Score = 152 bits (168), Expect = 1e-31 Identities = 187/251 (75%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AA 35523 ||||| ||||| | || |||||||| || || || | || | | | |||| || Sbjct 24471083 GATTACACTGGCCAAGGATTTGATCAACTGTTAGATGTAATTAACAAGATCA-AGAACAA 24471025 Query 35524 TCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGC 35583 ||| |||||| || |||| || ||| |||| ||||||||| |||||| | || ||||| Sbjct 24471024 TCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTGCTGATCTTAAACTGATGGC 24470965 Query 35584 TCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCA 35643 |||||||||||||||||| | | || |||||||| || ||||||||| | || || || Sbjct 24470964 ACTTCCTCCATGCCACATGTTTTCACAGTTTTATGTTGCGAATGGAGAACTTTCATGTCA 24470905 Query 35644 GTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 |||||||||| ||| || ||| || | ||||| || || || ||||| |||||| Sbjct 24470904 AATGTATCAGCGTTCAGCCGACATG--GGTCTTGGCGTACCGTTTAACATTGCCTCATAC 24470847 Query 35702 TCTCTTCTGAC 35712 |||||||| || Sbjct 24470846 TCTCTTCTTAC 24470836 >seq2 Length=28351830 Score = 118 bits (130), Expect = 2e-21 Identities = 178/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAAT 35524 ||||||||||| | || |||||||| | || || || | | | | | | | ||| Sbjct 16613769 GATTATACTGGTCAAGGATTTGATCAACTCGCAGATGTAATCGACAAGATCAAAAACAAT 16613828 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || |||||| | | || || | |||| ||||||||| |||||| | | ||||| Sbjct 16613829 CCTGATGATCGGCGCATTATATTATCGGCTTGGAATCCTTCTGATCTTAAGTTGATGGCA 16613888 Query 35585 CTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAG 35644 |||||||||||||||||| ||| || || ||||| || | || || | || || || Sbjct 16613889 CTTCCTCCATGCCACATGTTTGCACAGTTCTATGTTGCAGAAGGGGAGCTCTCATGTCAA 16613948 Query 35645 TTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACT 35702 |||||||||| |||||| ||| || | || ||||| || || ||||| || |||| Sbjct 16613949 ATGTATCAGCGTTCAGCGGATATG--GGTCTTGGTGTGCCGTTTAACATTGCTTCCTACT 16614006 Query 35703 CTCTTCTGACT 35713 ||||||| ||| Sbjct 16614007 CTCTTCTTACT 16614017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989231890241305