Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 239 6e-58 >seq5 Length=22804910 Score = 239 bits (264), Expect = 6e-58 Identities = 606/909 (67%), Gaps = 12/909 (1%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || || ||||| || | ||||| ||||||||||| || |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| ||||||| ||||| | ||| || | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 ||| ||||| || || || || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||| || || | ||| ||| ||||| ||||||| | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 33530 AAATCTAACGGTTTCTTCACTCGG--TGG-ATGTAATAAATGTTTAAACATCAAACATGC 33586 | | | || |||| ||||| | ||| | |||| | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 |||||| ||||| | ||| |||||||| |||||||||||||| || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| || ||||| || |||||||| || || ||| ||| || || || ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 33765 ||| || ||| || || | | | || | | | | | ||| ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 2412494 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | |||||| || ||||| | |||||||| |||||||| || ||| || |||| Sbjct 2412495 TCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGAT 2412554 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 | | |||| || ||||||| | ||||| |||| | |||| |||||| || |||| Sbjct 2412555 GATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAAT 2412614 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | || || ||||| || || || ||||||||||| | || |||| | || || | Sbjct 2412615 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 2412674 Query 33946 CTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| ||| |||||| || | ||||| || ||||| ||| || || || || Sbjct 2412675 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 2412733 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGAT 34063 || | ||| ||||| || || | ||| || | ||| || || | ||| ||| | | Sbjct 2412734 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 2412792 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 |||| || | ||| |||||||| ||||||| |||||||| || || || || ||||| Sbjct 2412793 GTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 2412852 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 34183 | |||||| | | || || ||||| || ||| ||||| | ||| |||| | ||| Sbjct 2412853 TTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGGTGTTGGAGTAAG 2412912 Query 34184 GATAGGTTC 34192 || ||| || Sbjct 2412913 GAGAGGCTC 2412921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629598966692880