Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 185 8e-42 seq7 82.4 7e-11 seq6 82.4 7e-11 >seq5 Length=22804910 Score = 185 bits (204), Expect = 8e-42 Identities = 582/886 (66%), Gaps = 22/886 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || ||||| |||| ||||| ||| |||||||||||||| |||| || || || Sbjct 2412020 TTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAAC 2412079 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | |||||||||| ||| | ||||| || | || | | | ||| Sbjct 2412080 TCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAAC 2412139 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || || || || ||||||||| ||| || || ||||||||| | | | Sbjct 2412140 AACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCA-A 2412198 Query 11519 TCCACC-GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 ||| |||| || | | |||||| | || || | ||||||||| | || Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 11578 CGACGTTATAACTTCCTTAGATGG--TGG-ATGTAATAAATGTTTAAACATTAAACACGC 11634 ||| | | ||||| | | ||| | |||| | | || |||| | ||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||| ||||||||||||||||| |||| ||| ||||| || ||||| || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | ||| ||||| || | ||| || || | | || |||||||| |||||||| || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT--ATCCAT 11812 || ||| || || ||||| | | ||| | || || | | || ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAAT--GTTTGAGATCCATCGATCCAA 2412493 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | | ||||| ||||||||| | || || || ||||| || || |||| | Sbjct 2412494 GTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGA 2412553 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 || | ||||| | |||||| | | || || || | | | | |||||| |||||| Sbjct 2412554 TGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAA 2412613 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || ||||| || ||||| ||||| ||||| ||||| || || || || |||||| Sbjct 2412614 TGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACA 2412673 Query 11993 TC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || |||| |||| | || | || || ||| || || ||| | || || || Sbjct 2412674 TCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAA 2412732 Query 12052 TGCTAGTATATGTTTTATAAAGT---ATTTTTCGTC-TTTAGTTAATTTATCCCAATCAT 12107 || |||| ||||| || |||| || | |||| || || |||| ||||| ||| Sbjct 2412733 AGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAG---ATTT-TCCCAGTCAC 2412788 Query 12108 CTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 |||| ||| | |||||||||||| | ||||| || ||| | | || || | Sbjct 2412789 GGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGT 2412848 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 |||||| |||||| | | || | ||| || || ||| ||| || Sbjct 2412849 ACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCT 2412894 >seq7 Length=29178675 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| |||| || ||| | | | || | |||| | | || | ||| || || |||||| Sbjct 28704345 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACCA 28704286 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 ||||||| || || | || |||||| | || |||| || |||||| ||||| Sbjct 28704285 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGAA 28704226 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | || || ||||| || ||| ||| || || | ||| ||||||||| |||| Sbjct 28704225 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 28704166 Query 38353 CCTTCTATACTGTCATCCTTTAT 38375 || || ||||| |||||||| || Sbjct 28704165 CCCTCAATACTATCATCCTTCAT 28704143 >seq6 Length=37079636 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 31021957 TTGAGGCCTTGGAGTTCCTGCGTTGAAAAGAGTAGGAGATGCATGAGTGAACCATCTCTG 31022016 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | | || |||| ||| || || |||||| | ||| || || | || Sbjct 31022017 AGACATTAAGTGGTAAGTTTTAATTGCAGAGTCAATATCATCCTTGTGTATCCCAACAGC 31022076 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA--TTTTATTATTCTGTTTAAGTAGA 38577 |||||||| ||||| ||||| || || || | | || || || |||||| || Sbjct 31022077 AACCCTCATCAGCATGTGTTGAGGCCTCTCAACAACTGTTCCTTGGACT-TTTAAG-AGG 31022134 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || ||| | || | ||||| | |||||| ||| ||| | |||| | ||||| Sbjct 31022135 TATGATCTCTCAAGCGTTTTGAATCCAAAGTAATCGTATTCAAAATCACGGTCGTA 31022190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468362157472240