Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq5 232 9e-56
seq7 123 3e-23
>seq5
Length=22804910
Score = 232 bits (256), Expect = 9e-56
Identities = 586/881 (67%), Gaps = 10/881 (1%)
Strand=Plus/Plus
Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925
||| || || ||||| || | ||||| ||||||||||| || |||| ||| ||
Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078
Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985
||||| |||| || ||||| | ||| ||| | ||| | | || | || | |
Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045
||| ||||| || ||||| || ||||| |||||| ||||| |||||| || | |
Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198
Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105
| ||||| || || | ||| ||| ||||| ||||| || | |||
Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258
Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 36162
||| | ||| |||| ||||| | | | ||| || | | || |||| ||||||| ||
Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315
Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222
|||||| ||||||| ||| |||||||| ||||||||||| || || || | || ||
Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375
Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282
||| || ||||| || |||||||| || || || || || ||||| ||||| || ||
Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435
Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342
||| || || || || | | | || | | | ||| ||||| |
Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGT 2412495
Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402
|||||| || ||||| | |||||||| || || || || ||| || ||||
Sbjct 2412496 CATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGATG 2412555
Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462
| | |||| || ||||||| | || || || | | |||| |||||| || |||||
Sbjct 2412556 ATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAATG 2412615
Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522
|| || ||||| || ||||| ||||||||||| | || |||| | ||||| ||
Sbjct 2412616 GATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC 2412675
Query 36523 TGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581
|| ||| |||||| || | ||||| || ||||||||| || || || || |
Sbjct 2412676 TG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAG 2412734
Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCATTGATA 36640
| | ||| ||||| || || | ||| | | ||| || || | ||| ||| | |
Sbjct 2412735 CGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTG 2412793
Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700
|||| || | ||| |||||||| ||||||| |||||||| || || || || |||||
Sbjct 2412794 TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACATT 2412853
Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
| |||||| | | || ||||||||||| ||| |||||
Sbjct 2412854 TCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCT 2412894
>seq7
Length=29178675
Score = 123 bits (136), Expect = 3e-23
Identities = 161/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
|||||| ||||| | || | ||| || | |||| | || |||| ||| |||| ||||||
Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| ||| ||||| || || ||||| |||||| | ||||| |||||| ||| ||
Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| || || || || |||| || ||| || ||| ||||||||||| ||
Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167
Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437
||||| |||||||||||| |||| || ||||| ||||||
Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657944323539640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |