Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 232 9e-56 seq7 123 3e-23 >seq5 Length=22804910 Score = 232 bits (256), Expect = 9e-56 Identities = 586/881 (67%), Gaps = 10/881 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || ||||| || | ||||| ||||||||||| || |||| ||| || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||| || ||||| | ||| ||| | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 ||| ||||| || ||||| || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | ||||| || || | ||| ||| ||||| ||||| || | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 36106 AGATATTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 36162 ||| | ||| |||| ||||| | | | ||| || | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 |||||| ||||||| ||| |||||||| ||||||||||| || || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| || ||||| || |||||||| || || || || || ||||| ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 ||| || || || || | | | || | | | ||| ||||| | Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGT 2412495 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 |||||| || ||||| | |||||||| || || || || ||| || |||| Sbjct 2412496 CATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGATG 2412555 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | | |||| || ||||||| | || || || | | |||| |||||| || ||||| Sbjct 2412556 ATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAATG 2412615 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 || || ||||| || ||||| ||||||||||| | || |||| | ||||| || Sbjct 2412616 GATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC 2412675 Query 36523 TGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 || ||| |||||| || | ||||| || ||||||||| || || || || | Sbjct 2412676 TG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAG 2412734 Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCATTGATA 36640 | | ||| ||||| || || | ||| | | ||| || || | ||| ||| | | Sbjct 2412735 CGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTG 2412793 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 |||| || | ||| |||||||| ||||||| |||||||| || || || || ||||| Sbjct 2412794 TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACATT 2412853 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 | |||||| | | || ||||||||||| ||| ||||| Sbjct 2412854 TCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCT 2412894 >seq7 Length=29178675 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || | |||| | || |||| ||| |||| |||||| Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||| ||||| || || ||||| |||||| | ||||| |||||| ||| || Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| |||||||||||| |||| || ||||| |||||| Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657944323539640