Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq6 100 3e-16 seq8 89.7 5e-13 seq1 86.0 6e-12 >seq3 Length=27950219 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| ||| ||||| | || ||||| ||||| ||||| ||||| | Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||||||||| ||| |||| || | ||| || || ||||| Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| || ||||||| | || ||| Sbjct 5226942 ATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACC 5227001 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| || | |||||||| || | ||||| ||||| |||||||| || Sbjct 5227002 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 5227051 >seq6 Length=37079636 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || ||||| || |||||||| || ||| Sbjct 19969761 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 19969820 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || |||||| | || ||||| ||||| || ||||| Sbjct 19969821 AAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 19969880 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 19969881 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACC 19969940 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 19969941 TCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 19969988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| |||||| || || || | ||||||||||| || || || || ||| | Sbjct 19969989 CCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCC 19970048 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||| || || || || | |||| | |||||| || ||||| Sbjct 19970049 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGA 19970108 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| || | | || | ||||||| | || || Sbjct 19970109 ATACCCTCTTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACT 19970168 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | ||||| |||||||| || || || || || |||||| || Sbjct 19970169 TCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCATACCT 19970219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||| | || ||||| || ||||| || || || | Sbjct 13448141 CCACCACGGAGACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCC 13448082 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || || ||| |||| ||||| ||||| || || || Sbjct 13448081 AAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGG 13448022 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 13448021 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCCACC 13447962 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| |||||||| || || ||||| || |||||| Sbjct 13447961 TCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCATA 13447914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | |||||||| || || ||||| || || | Sbjct 19969533 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 19969592 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||||||||| |||| ||||| ||||| || || || Sbjct 19969593 AAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGG 19969652 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 19969653 ATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACT 19969712 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| || || | || || ||||| || |||||| Sbjct 19969713 TCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCATA 19969760 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || |||||||| |||||||| ||||| | Sbjct 13448369 CCACCACGGAGACGGAGGACCAAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCC 13448310 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || ||||| |||||||| |||| ||||| ||||| || || || Sbjct 13448309 AGTGTACGACCATCCTCAAGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGA 13448250 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | || || | | ||| || Sbjct 13448249 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACT 13448190 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||||||||| | || || ||||| || |||||| Sbjct 13448189 TCAAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACGAAAATCTGCATA 13448142 >seq8 Length=40886855 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || || | ||| ||||| | || ||||| || || || || || ||| Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || |||||||| |||| || | ||||||||| ||||| Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 1190177 ATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTCTCGACC 1190236 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| |||||||||||||| Sbjct 1190237 TCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || || || || || ||||| ||||| Sbjct 1188620 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCA 1188679 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || ||||| || |||| || | |||||||| ||||| Sbjct 1188680 AGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1188739 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | |||||| | | |||||| Sbjct 1188740 ATCCCTTCCTTGTCC-TGAATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCAC 1188798 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | || || || || | || || |||||||| |||||| Sbjct 1188799 CTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACGAATATCTGCATA 1188847 >seq1 Length=25238555 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGT 139610 |||||| || |||| ||| |||||||| |||||||| || || ||| | ||| | | Sbjct 21980186 CAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCCGCT-AGTGTACGACCAT 21980244 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || |||||||||||| |||||| | || ||||| || ||||| || ||||||| Sbjct 21980245 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGTATTCCCTCTTTGT 21980304 Query 139671 C 139671 | Sbjct 21980305 C 21980305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495891797583200