Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 259 7e-64 seq7 114 2e-20 >seq5 Length=22804910 Score = 259 bits (286), Expect = 7e-64 Identities = 606/902 (67%), Gaps = 12/902 (1%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | ||||| ||||||||||| || |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| ||||||| ||||| | ||| ||| | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 ||| |||||||| ||||| || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | ||||| || || | ||| ||| ||||| |||||||| | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 49908 AGATCTAACGGTTTCTTCACTCGG--TGG-ATGCAATAAATGTTTAAACATCAAACATGC 49964 ||| | || |||| ||||| | ||| | | || | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 49965 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 50024 |||||| ||||| | ||| |||||||| |||| |||||| || || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 50025 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCC 50084 ||| || ||||| || |||||||| || || || || || ||||| ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCATGTATCCACT 50143 ||| || || || || || | | || | | | | | | ||| ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 2412494 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | |||||| || ||||| | |||||||| |||||||| || ||| || |||| Sbjct 2412495 TCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGAT 2412554 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 | | |||| || ||||||| | ||||| |||| | |||| |||||| || |||| Sbjct 2412555 GATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAAT 2412614 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || || ||||| || || || ||||||||||| | || |||| | || || | Sbjct 2412615 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 2412674 Query 50324 CTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| ||| |||||| ||| | ||||| || ||||||||| || || || || Sbjct 2412675 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 2412733 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAATCATTGAT 50441 || | ||| ||||| || || || ||| | | ||| || || | ||| ||| | | Sbjct 2412734 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 2412792 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 |||| || | |||||||||||| ||||||| |||||||| || || || || ||||| Sbjct 2412793 GTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 2412852 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 | |||||| | | || || ||||| || ||| ||||| | ||| |||| | ||| Sbjct 2412853 TTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGGTGTTGGAGTAAG 2412912 Query 50562 GA 50563 || Sbjct 2412913 GA 2412914 >seq7 Length=29178675 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| || | |||| | || |||| ||| |||| |||||| Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||| ||||| || || ||||| |||||| | ||||| |||||| ||| || Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| || |||||||| |||| || ||||| |||||| Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718019461964440