Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 152 5e-32 >seq5 Length=22804910 Score = 152 bits (168), Expect = 5e-32 Identities = 557/858 (65%), Gaps = 27/858 (3%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| |||||||| || ||||| || |||| || | || | Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTT---GTAAACTAAT 2412075 Query 13640 T---TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTA 13695 ||||| ||||||| ||||| | | ||| | |||||||| || | || || | Sbjct 2412076 CAACTCCATCCAATCAAAAGGATT-ACTCACACCATACACTTTACCATACCCAAGCGCAC 2412134 Query 13696 ATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13755 ||| || ||||| |||| |||||||||||| ||| ||| || |||| ||||||||| | Sbjct 2412135 ATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAA 2412194 Query 13756 TTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTA 13815 | ||||| | || ||| ||| | || || || || || | Sbjct 2412195 CCAACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAA 2412254 Query 13816 TAATA-ATTGTAATAAT--CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAAC 13872 |||| | | | | | |||| || || | || | | | | | |||| |||| Sbjct 2412255 CAATAGACTTCACTCTTTCCTCACTA--AGCTTGGTACGTAACA-GAGTGTAAATCAAAC 2412311 Query 13873 ACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATC 13932 | || |||||||| || | || || ||||| || | |||||| || || ||||| | Sbjct 2412312 AAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAAC 2412371 Query 13933 CTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATA 13992 | ||||| | ||| ||||| || | ||| || || | | || || || || ||||||| Sbjct 2412372 CAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATA 2412431 Query 13993 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT- 14051 | || ||||| ||| ||||||| | ||||| | || | ||| | || || Sbjct 2412432 TACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATC 2412486 Query 14052 -ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | |||||||| || ||| || ||| | || || ||||| || ||| Sbjct 2412487 GATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACG 2412546 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 |||| || || | ||||| || | ||||| || || | ||| | |||||| Sbjct 2412547 GAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACAT 2412606 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA-GCATCTAGCTTCCGACC 14229 || || || || || || ||||| || || || || || || ||| | ||||| || Sbjct 2412607 CTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGA 2412665 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 |||||| || || |||| | || | ||||| || || || ||| || | Sbjct 2412666 CTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGG 2412725 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 | || || || | || || ||| || |||| | ||| | | |||||| |||| ||| | Sbjct 2412726 CGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGT 2412785 Query 14350 C--GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | || | || | || ||||||||||| || ||||||| || || | ||||| Sbjct 2412786 CACGGTTG--TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTT 2412843 Query 14408 TTTATACATTACCCATAT 14425 || |||||| |||| || Sbjct 2412844 CTTGTACATTTCCCAGAT 2412861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479561468421400