Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 187 2e-42 >seq5 Length=22804910 Score = 187 bits (206), Expect = 2e-42 Identities = 560/855 (65%), Gaps = 21/855 (2%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| ||||||||||| ||||| || |||| || | || | Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTT---GTAAACTAAT 2412075 Query 13428 T---TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTA 13483 ||||| |||| || ||||| | ||| | |||||||| || | || || | Sbjct 2412076 CAACTCCATCCAATCAAAAGGATTACTC-ACACCATACACTTTACCATACCCAAGCGCAC 2412134 Query 13484 ATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13543 |||| || ||||| |||| |||||||||||| ||| ||| || |||| ||||||||| | Sbjct 2412135 ATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAA 2412194 Query 13544 TTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 13603 | ||||| | | || ||| ||| | || || || || ||| | Sbjct 2412195 CCAACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAA 2412254 Query 13604 TAATAATCTTAATAATGTCATTAG-AAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13662 |||| ||| | | || | | ||| | || | | | | | |||| ||||| Sbjct 2412255 CAATAGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACA-GAGTGTAAATCAAACAA 2412313 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || |||||||| || | || || ||||| || | |||||| || || ||||| || Sbjct 2412314 GCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCA 2412373 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| | ||| ||||| || | ||| || || | | ||| || || || |||||||| Sbjct 2412374 GGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATA 2412433 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--A 13840 || ||||| ||| ||||||| | ||||| | || | ||| | | || | Sbjct 2412434 CCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATG-----TTTGAGATCCATCGA 2412488 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 |||| | |||||||| || ||| || ||| | || || |||||||||||| || Sbjct 2412489 TCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGA 2412548 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 ||| ||| || | ||||| || | ||||| || || | ||| | |||||| | Sbjct 2412549 ATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCT 2412608 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 | || || || || || ||||| || || || || || || | ||||| || || Sbjct 2412609 CTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTT 2412668 Query 14021 GTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 |||| || || |||| | || | |||||| || || || ||| || || | Sbjct 2412669 GTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGA 2412728 Query 14081 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--C 14138 | || || | || || ||| || |||| | ||| | | |||||| |||| ||| | | Sbjct 2412729 AGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCCCAGTCAC 2412788 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 || | || | || ||||||||||| || ||||||| || || | ||||| || Sbjct 2412789 GGTT--GTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTT 2412846 Query 14199 ATACATTACCCATAT 14213 |||||| |||| || Sbjct 2412847 GTACATTTCCCAGAT 2412861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478422663880440