Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 seq3 96.9 3e-15 seq1 95.1 9e-15 >seq6 Length=37079636 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||||| || | ||| ||||| || | ||||||||| | | Sbjct 13447165 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCC 13447106 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||||||| || || || || ||||||| ||| ||||| | || Sbjct 13447105 AAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 13447046 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || | |||| || || | | || || | || || Sbjct 13447045 ATCCCTTCCTTATC-CTGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCAC 13446987 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| |||||||||||||| || ||||| Sbjct 13446986 CTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | ||||| || | ||| |||||| || | ||||||||| | | Sbjct 19970445 CCACCACGAAGCCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCC 19970504 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| || || || || || ||||||| ||| ||||| | || Sbjct 19970505 AAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 19970564 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || || | | ||||| | || || Sbjct 19970565 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACC 19970624 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| |||||||||||||| || ||||| Sbjct 19970625 TCGAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 19970671 >seq3 Length=27950219 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| | | ||||| | || || | ||||| |||||||| Sbjct 5226630 TCCTTTTGGATATTGTAATCCGCAAGAGTACGACCATCCTCTAGCTGTTTACCGGCAAAG 5226689 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || |||||| || | | | |||||||| || |||| ||||||| || Sbjct 5226690 ATAAGTCTCTGTTGGTCCGGAGAGATTCCTTCTTTATCTTGGATCTTGGCTTTGACGTTG 5226749 Query 43039 CCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| ||| | |||| || | ||||| ||||| || ||||| |||||||| Sbjct 5226750 TCAATGGTGTCTG-AGCTTTCGACCTCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCAC 5226808 Query 43098 AAAAATTTGCAT 43109 ||| |||||||| Sbjct 5226809 AAAGATTTGCAT 5226820 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| ||||||||| | |||||||| | ||| ||||| |||| || Sbjct 5226840 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCG 5226899 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| |||||||| || | | ||||| || | || | |||||||| || | Sbjct 5226900 AGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTCTTTGTCTTGG 5226959 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| | | || |||||| ||| | |||| || | ||||| || || Sbjct 5226960 ATCTTGGCATTGACGTTTTCGACGGTGTCGG-AGCTTTCGACCTCAAGTGTTATGGTCTT 5227018 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||||||||| || |||||||| Sbjct 5227019 GCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 >seq1 Length=25238555 Score = 95.1 bits (104), Expect = 9e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 42932 TGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTT 42991 ||||||| | | ||| | | |||| || |||||||| || ||||| ||||| || |||| Sbjct 18011422 TGTAATCAGCGAGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTT 18011363 Query 42992 GATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGC 43051 | || | || | ||||| || || ||| | |||| || || ||| |||||| Sbjct 18011362 GGTCCGGTGGAATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTG 18011303 Query 43052 CAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTT 43111 || || || |||| ||||| || || || ||||| ||||||||||| || ||||||| Sbjct 18011302 AAGATTCAACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTT 18011243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381240522002718