Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 259 6e-64 seq7 123 3e-23 >seq5 Length=22804910 Score = 259 bits (286), Expect = 6e-64 Identities = 604/901 (67%), Gaps = 10/901 (1%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || ||||| || | ||||| |||||||||||||| |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||| ||||| | ||| ||| | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 ||| ||||| || | || || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||| || || | ||| ||| ||||| ||||| || | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 42013 AGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 42069 ||| | ||| |||| ||||| | | | ||| || | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 |||||| ||||| | ||| || ||||| ||||||||||| || || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| || ||||| || |||||||| || || || || || ||||| ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 ||| || || || || | | | || | | | ||| ||||| | Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATCCATCGATCCAAGT 2412495 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||||| || ||||| | |||||||| |||||||| || ||| || |||| Sbjct 2412496 CATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGATG 2412555 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | | |||| || ||||||| | || || |||| | |||| |||||| |||||||| Sbjct 2412556 ATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAATG 2412615 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || || ||||| || || || ||||||||||| | || |||| || ||||| || Sbjct 2412616 GATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC 2412675 Query 42430 TGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 || ||| |||||| ||| | |||||| || ||||||||| || || || || | Sbjct 2412676 TG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAAG 2412734 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATA 42547 | | ||| ||||| || || | ||| |||| ||| | || | ||| ||| | | Sbjct 2412735 CGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTTG 2412793 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 |||| || | |||||||||||| | ||||| ||||||||||| || || || ||||| Sbjct 2412794 TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACATT 2412853 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGG 42667 | |||||| | | || |||||||| || ||| ||||| | ||| |||| | |||| Sbjct 2412854 TCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGGTGTTGGAGTAAGG 2412913 Query 42668 A 42668 | Sbjct 2412914 A 2412914 >seq7 Length=29178675 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| || | |||| | || |||| ||| |||| |||||| Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| ||| | ||||| || || ||||| |||||| | ||||| ||||| ||| || Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||||||| |||| || ||||| |||||| Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670906222415960