Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 113 5e-20 seq6 96.9 4e-15 seq8 91.5 1e-13 seq1 86.0 6e-12 seq4 84.2 2e-11 >seq3 Length=27950219 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||||| ||| || || | || || || ||||| ||||||||||| | Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| ||||| |||||||| ||| |||| || | ||| || || ||||| Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| || ||||| | | ||| || Sbjct 5226942 ATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACC 5227001 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 |||| || | |||||||| || | ||||| ||||| |||||||| || Sbjct 5227002 TCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCATCGC 5227051 >seq6 Length=37079636 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| |||||| || ||||||| ||| ||||| || ||||||||||| | Sbjct 13447621 CCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCC 13447562 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| || || ||||| || |||||| | ||||| || ||||| Sbjct 13447561 AAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 13447502 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || ||| || | | || | || || | | ||| ||| Sbjct 13447501 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAACT 13447442 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| ||||| || || || || || |||||| Sbjct 13447441 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 13447394 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | ||| | |||| || || ||||| || |||||||| || ||| Sbjct 33565538 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT 33565479 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | |||||||||||||| || ||| |||| || | ||||| || ||||| Sbjct 33565478 AAT-GTCCGACCATCTTCGAGTTGTTTTCCCGCAAAGATTAGCCTCTGCTGGTCCGGAGG 33565420 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| || ||| | | || | || |||| | ||| || Sbjct 33565419 GATCCCTTCCTTATCTTGAATCTTCGCTTTCACATTGTCAATTGTATCCGAGCTTTCGAC 33565360 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||| || ||||| || || || ||||| ||||| Sbjct 33565359 CTCAAGAGTTATCGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 33565312 >seq8 Length=40886855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | || | ||| || ||||| || ||||||||||| Sbjct 1189829 CCACCACGAAGACGCAAGACAAGGTGGAGTGTGGACTCTTTCTGGATGTTGTAATCCGCA 1189888 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || |||||||| |||| || | ||||||||| ||||| Sbjct 1189889 AGAGTCCTTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1189948 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| || || || | | || | || || | | ||| || Sbjct 1189949 ATTCCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTATCGGAGCTTTCAACC 1190008 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| |||||||| || || || || ||||||||| Sbjct 1190009 TCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATA 1190056 >seq1 Length=25238555 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGT 143030 |||||| ||||||| || || ||||| || |||||||| || ||| | ||| | | Sbjct 21980186 CAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCCGCT-AGTGTACGACCAT 21980244 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||||||||||||| |||||| | || ||||| || ||||| || ||||||| Sbjct 21980245 CTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGTATTCCCTCTTTGT 21980304 Query 143091 C 143091 | Sbjct 21980305 C 21980305 >seq4 Length=23266485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 6/123 (5%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAG- 143029 ||| || | ||||| ||||| ||||| || ||||||||||| ||| | | |||| Sbjct 12669203 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCTAAG---GTTCGACC 12669147 Query 143030 -TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| ||||| ||||||||| | ||||| | || ||||| || ||||| |||||||| Sbjct 12669146 ATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGTGGTATACCTTCTTT 12669087 Query 143089 GTC 143091 ||| Sbjct 12669086 GTC 12669084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506838396288720