Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 2e-13 seq3 86.0 9e-12 >seq7 Length=29178675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| |||||| ||| | |||| |||||| | ||||||||||| ||| | Sbjct 24471034 TCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTGCTGATCTTA 24470975 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGA-TGGCAA 70302 | | |||||||| || || || ||| ||||| | |||||||| | | ||| ||| | Sbjct 24470974 AACTGATGGCACTTCCTCCATGCCACATGTTTT-CACAGTTTTA-TGTTGCGAATGGAGA 24470917 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 | | ||||| |||||||||| | ||||||||||| || || ||||| |||||||| Sbjct 24470916 ACTTTCATGTCAAATGTATCAGCGTTCAGCCGACATGGGTCTTGGCGTACCGTTTAACAT 24470857 Query 70363 TGC 70365 ||| Sbjct 24470856 TGC 24470854 >seq3 Length=27950219 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| ||||| |||||| | || || ||||| || |||| |||||| || Sbjct 18680462 GCCATCTTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGTTTGACCTTTTCAAACGAGCTT 18680521 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| ||||||||||||| |||||||||||||| Sbjct 18680522 ATATCTAGAGACGAGGGCCTCCACTGTGACTTTGC 18680556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740801950561960