Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq4 107 1e-18 seq6 95.1 9e-15 seq8 93.3 3e-14 seq3 89.7 4e-13 >seq1 Length=25238555 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| |||| || ||| |||||||| || || ||||| || ||| ||||||| Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| |||||||||||||||| || || | ||||||||||||||||| |||| Sbjct 18011411 AGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGA 18011352 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| ||| || ||| || ||| | || || || || | ||| || Sbjct 18011351 ATTCCTTCCTTGTCTTGAATCTTCGCT-TTCACATTGTCAATTGTGTCTGAAGATTCAAC 18011293 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||| || || || || || || ||||| ||||| || ||||| Sbjct 18011292 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 18011245 >seq4 Length=23266485 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| || || ||||| || || || || |||||||| || Sbjct 5744573 CCACCTCTCAACCTGAGAACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCA 5744514 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||||| || || | || | | ||||||||| || Sbjct 5744513 AGAGTACAACCATCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGG 5744454 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||| || ||| || | || || ||||| | | || || Sbjct 5744453 ATTCCTTCTTTATCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAACT 5744394 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| ||||||| ||||||| || || ||||| ||||| |||||||| Sbjct 5744393 TCTAGGGTAATGATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||| || ||||| || ||||||||||| | | |||| ||||| Sbjct 13447606 AACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 13447547 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || ||| | ||||| | || ||||| ||||| || |||||||| Sbjct 13447546 TCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 13447487 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||||| ||| ||| | || || |||||| |||| || || || |||||||| Sbjct 13447486 TGGATCTTTGC-CTTCACATTATCAATAGTATCGGAGCTTTCAACTTCCAAAGTAATGGT 13447428 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| || || ||||| || |||||| Sbjct 13447427 CTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 13447394 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| || | || || || ||||| || || || || ||||||||||| Sbjct 33565082 CCTCCTCTCAACCTGAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCA 33565023 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || || | || || || || | |||| | || ||||| || Sbjct 33565022 AGAGTTCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 33564963 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| |||||| ||| || ||| | || ||||| || | || || Sbjct 33564962 ATTCCTTCCTTGTCTTGAATTTTAGCT-TTAACATTGTCAATGGTGTCTGAGCTCTCGAC 33564904 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||||| |||||||| || || || || ||||| || | ||| Sbjct 33564903 TTCTAGGGTAATCGTTTTACCAGTAAGTGTCTTGACAAATATCTACAT 33564856 >seq8 Length=40886855 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || ||||||||||| ||| | || | ||||| | || Sbjct 1189853 TGGAGTGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTCAAGCTGC 1189912 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | | ||| || || |||||||| |||||||| || || Sbjct 1189913 TTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATCTTA 1189972 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || |||||| |||| || || | |||||||| || || ||| Sbjct 1189973 GCCTTGACATTATCAATAGTATCGGAGCTTTCAACCTCAAGAGTAATGGTCTTTCCGGTC 1190032 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||| || ||||| ||||||||| Sbjct 1190033 AAAGTCTTGACAAAGATTTGCATA 1190056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || || || ||||||||||| ||| | || | ||||| Sbjct 1188637 AACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTC 1188696 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | || | | || || || ||||| ||||| ||||| Sbjct 1188697 AAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 1188756 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | ||||| || || | || || || | |||||||||||| Sbjct 1188757 AATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTT 1188816 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || || || || |||||| Sbjct 1188817 ACCAGTGAGGGTCTTCACGAATATCTGCATA 1188847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| || || | ||| || || || || || ||||| ||| Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | ||||| | ||| || |||||| | || | | ||| || || ||| Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || || || || | || || Sbjct 1190177 ATACCTTCCTTGTCCTGGATCTTTGC-CTTAACATTATCGATAGTGTCAGAGCTCTCGAC 1190235 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || |||||||| || || |||||||| Sbjct 1190236 CTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 >seq3 Length=27950219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 15129 CATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGT 15188 |||| | |||||||||| | || || ||||| ||||| || || || || ||||| | Sbjct 14806209 CATGCATCCCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTATGAATGTTAT 14806150 Query 15189 AATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT 15248 |||| || ||| | || || | |||||| ||||| | || | | |||| || Sbjct 14806149 AATCCGCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTAGT 14806090 Query 15249 CGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTA 15307 | || |||||||| ||||| ||| || ||| || ||| | || ||||| | Sbjct 14806089 CCGGAGGGATTCCTTCCTTGTCTTGAATCTTAGCT-TTAACATTGTCAATGGTGTATGAG 14806031 Query 15308 TTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||| ||||||||||||||| || || || || ||||| || ||||| Sbjct 14806030 CTCTCGACTTCTAGGGTAATGGTTTTACCAGTAAGTGTCTTGACAAATATCTGCAT 14805975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 || |||||||| | | ||| || || || || || || ||||| ||||||||||| || Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | |||| || | ||||| || || | || | | ||||||||| || Sbjct 5226882 AAGG-TACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGG 5226940 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || ||| || || |||| | ||| ||| |||| || Sbjct 5226941 GATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGAC 5227000 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || |||||||| || || |||||||| Sbjct 5227001 CTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362056617167511