Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq4 89.7 4e-13 seq3 84.2 2e-11 >seq6 Length=37079636 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | |||| ||| | || || ||||| || || ||||||||||| Sbjct 33565082 CCTCCTCTCAACCTGAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCA 33565023 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||| ||||| ||||| ||| | || || |||||||| ||| || Sbjct 33565022 AGAGTTCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 33564963 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| ||| || | | | | || || ||| | Sbjct 33564962 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 33564903 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| |||||||| || | || |||||||| || | ||| Sbjct 33564902 TCTAGGGTAATCGTTTTACCAGTAAGTGTCTTGACAAATATCTACAT 33564856 >seq4 Length=23266485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || ||||||||||| || ||||| ||||| | || | | ||||| ||||| Sbjct 5744946 GTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTACGGCCATCCTCGAGCTG 5744887 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||||||| | |||||||||| ||| ||| || | || || ||||| ||| || Sbjct 5744886 TTTACCCGCAAAGATAAGTCTCTTCTGTTCCGGAGGGATCCCTTCCTTGTCTTGAATCTT 5744827 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | || || ||| ||| | ||||||||||||| || Sbjct 5744826 AGCTTTAACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTATTGGT 5744767 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || |||||||| || ||||| Sbjct 5744766 AAGCGTCTTGACAAATATCTGCAT 5744743 >seq3 Length=27950219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | | |||| ||| | || ||||||||||| || |||||||| ||| Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||||||||| ||| | ||||| || || || ||| || Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 18935 ACGCCCTCTTTGTC 18948 | || |||||||| Sbjct 5226942 ATTCCTTCTTTGTC 5226955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414432484078774