Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq4 86.0 4e-12 seq6 84.2 2e-11 >seq1 Length=25238555 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| |||| || |||||||| ||||| ||||| || || | ||||| Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | || || ||||||||||||||||| ||||| ||||| |||||| | || Sbjct 18011411 AGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGA 18011352 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||| || ||| || | ||| || |||| | || || Sbjct 18011351 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAACC 18011292 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAG 44127 || | || ||||| || || |||| || |||||||| || ||||| ||||| Sbjct 18011291 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTCGAG 18011239 >seq4 Length=23266485 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 43975 TTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAAT 44034 |||||| || ||||| || || | |||||||||| |||| | |||||||||||| ||| Sbjct 5748390 TTGTTTACCGGCAAAGATTAATCTTTGCTGGTCCGGAGGGATCCCTTCTTTATCTTGAAT 5748331 Query 44035 TTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACC 44094 || ||| || | ||| ||||||| ||| || || | ||||| |||||||| Sbjct 5748330 CTTCGCTTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACC 5748271 Query 44095 GGTTAAAGTCTTCACAAATATTTGCAT 44121 || | | ||| |||||||| ||||| Sbjct 5748270 CGTAAGCGCCTTGACAAATATCTGCAT 5748244 >seq6 Length=37079636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 43976 TGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATT 44035 || ||||| || || ||||||| ||||| ||| |||| | |||||| |||||| ||| Sbjct 13447312 TGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATC 13447253 Query 44036 TTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 || ||| || || | | || || | ||| || |||| ||||| |||||||| Sbjct 13447252 TTAGCTTTCACGTTATCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATAGTTTTACCA 13447193 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||||||||| || ||||| Sbjct 13447192 GTCAAGGTCTTCACAAAGATCTGCAT 13447167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354657522306108