Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 seq6 86.0 5e-12 >seq4 Length=23266485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | |||||| || | ||| || ||||| ||||| || ||| Sbjct 12669229 TTAATCATGGTTCCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATG 12669170 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | ||| | |||||| | ||| || || ||| |||| ||||||||| Sbjct 12669169 TTGTAATCAGCTAAGGTTCGACCATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGT 12669110 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 12669109 TGATCAGGTGGTATACCTTCTTTGTC 12669084 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || |||| | |||||||||||| || ||| ||||| || ||||||||||| || Sbjct 13447621 CCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCC 13447562 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||| | || || || || | || | ||||| || || || Sbjct 13447561 AAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 13447502 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| || ||| ||||| | ||| || |||| ||| | Sbjct 13447501 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAACT 13447442 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||||| ||||| ||||| || |||||||| || ||||| Sbjct 13447441 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419445186909651