Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5 178 1e-39 seq3 86.0 5e-12 >seq5 Length=22804910 Score = 178 bits (196), Expect = 1e-39 Identities = 561/858 (65%), Gaps = 21/858 (2%) Strand=Plus/Plus Query 12847 CATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTC 12906 ||||||||| ||| ||||| || | |||||| ||||||||||| || || || |||| Sbjct 2412007 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTG 2412066 Query 12907 TAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCC 12966 ||| ||| ||||| |||| |||||||| || || ||| ||| | |||| Sbjct 2412067 TAAACTAATCAACTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCC 2412126 Query 12967 TAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTT 13026 | | |||||| || || ||||||||||| || ||||| |||| || |||| || Sbjct 2412127 AAGCGCACATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATT 2412186 Query 13027 CATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGC 13086 ||| || | || ||| | ||||| || ||| | | | || || ||||| || Sbjct 2412187 CATACCAACCAACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGC 2412246 Query 13087 TTCGATAACTATG----TCTCTTATTACGTTCTCTAATGGAGG-ATTTGATAGATGCTTA 13141 ||| ||| || || || || | || |||| || | | | ||| | || Sbjct 2412247 ATCGCAAACAATAGACTTCACTCTTTCC--TCACTAAGCTTGGTACGTAACAGA-GTGTA 2412303 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 || ||| ||| || ||||||||||| || ||||| ||||| |||| ||||| || Sbjct 2412304 AA--TCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAG 2412361 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || |||| ||| ||||| || || ||||| |||| ||| || || | | || ||||| Sbjct 2412362 AAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCA 2412421 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || || ||||| |||||||| || ||||||| | | |||| | | || | | Sbjct 2412422 GAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGAT 2412481 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | || ||||| | | ||||| ||||| | |||| || || |||| Sbjct 2412482 ---CCATCGATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCG 2412538 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 ||||| |||| || || | |||| || | ||| || ||||| || | || ||| Sbjct 2412539 ATTGCACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGA-GAAGAAG 2412597 Query 13442 -CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 |||||| |||||||| ||||| || || || |||||||| || || || | || Sbjct 2412598 AGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGC 2412657 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 || || || || || || || |||| | || | ||||||| || || ||||| Sbjct 2412658 TTCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTC 2412717 Query 13561 ACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt---ttttttCGTTTTCTGACAA 13617 | || || || ||||| |||| ||| || || || | || | ||| | ||| | Sbjct 2412718 AGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGT-TGAGA- 2412775 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 ||| ||| || | |||| ||| | |||||| || || | ||||| || || || Sbjct 2412776 -TTTTCCCAGTCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGC 2412834 Query 13678 AACAGCCTTCTTATACAT 13695 | || ||||| ||||| Sbjct 2412835 TTCGGCTTTCTTGTACAT 2412852 >seq3 Length=27950219 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | || || |||||| ||| |||||||||||||| || | Sbjct 18680560 ACAAGCAAAGTCACAGTGGAGGCCCTCGTCTCTAGATATAAGCTCGTTTGAAAAGGTCAA 18680501 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 |||||||||||| |||| || |||| ||| || || ||| Sbjct 18680500 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCA 18680461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430836530100942