Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq8 87.8 2e-12 >seq6 Length=37079636 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| || ||||| || ||||| || || |||||||| ||||| ||| | || Sbjct 13447150 AACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCCATCT 13447091 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| |||||||| || | || || | |||||||||| || | | |||||| ||| Sbjct 13447090 TCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTTATCC 13447031 Query 48635 ATAATTTTCTGCTTGA---TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 ||| ||| |||| | | | || || ||||| | | ||| ||||| || || Sbjct 13447030 TGAATCTTC-GCTTTAACATTGTCG--ATCGTATCAGAACTTTCCACCTCGAGAGTGATT 13446974 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||||||||||||||| ||||||||| Sbjct 13446973 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 13446938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||||||| || | ||||| ||||| ||||| || | Sbjct 19969568 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 19969627 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 |||| ||||||||| ||| || | || |||||||||| || || ||||| | Sbjct 19969628 GATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATT 19969687 Query 48655 CGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || | || ||| || || | | || ||||| || || || ||||| ||| Sbjct 19969688 GTCAATTGTGTCAG-AG-CTCTCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTC 19969745 Query 48713 ACAAAAATCTGCAT 48726 || ||||||||||| Sbjct 19969746 ACGAAAATCTGCAT 19969759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| |||||||| || ||||| || || ||||||||||||||||| || |||| Sbjct 13447606 AACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 13447547 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCC 48613 || |||||||||||| || | || || | |||||| ||| Sbjct 13447546 TCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCC 13447508 >seq8 Length=40886855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTC 48576 || |||||||| || ||||| || ||||||||||| || || ||| || || || Sbjct 1188638 ACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGC-AAGAGTCCTTCCATCTTC 1188696 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||||||| || | || | | |||||||||| || | | |||||||||| Sbjct 1188697 AAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 1188756 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | |||| || || | |||| ||| | || |||||||| Sbjct 1188757 AATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTT 1188816 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| || ||||| || |||||||| Sbjct 1188817 ACCAGTGAGGGTCTTCACGAATATCTGCAT 1188846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421108623713771