Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq18350 111 8e-20 seq14051 111 8e-20 seq6 111 8e-20 seq26409 109 3e-19 seq8 109 3e-19 seq3 109 3e-19 seq2 105 3e-18 seq5 102 4e-17 seq7 100 1e-16 >seq1 Length=25238555 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||| | ||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 3063311 AATAAAAATTGAAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGC 3063252 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||| |||||||||||||||||||| || Sbjct 3063251 ACGACGCTCTAACCAACTGAGCTAATGGGCCATC 3063218 Score = 104 bits (114), Expect = 1e-17 Identities = 86/106 (81%), Gaps = 6/106 (6%) Strand=Plus/Plus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || |||||| |||| ||||||| |||| || | ||||||||||| |||||| Sbjct 8638587 GGTAATATAAAATTTTAAAAAAAT------GGCCTATACAGGGATCGAACCTGTGACCTT 8638640 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 8638641 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCTTC 8638686 >seq18350 Length=729 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 442 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 383 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 382 TGAGCTAATGGGCCG 368 >seq14051 Length=1282 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 103 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44 Query 11516 TGAGCTAATGGGCCGTCG 11533 ||||||||||||||| || Sbjct 43 TGAGCTAATGGGCCGGCG 26 >seq6 Length=37079636 Score = 111 bits (122), Expect = 8e-20 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 ||| |||| |||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 35563754 AATTAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 35563696 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | |||||||||||||||||||| Sbjct 35563695 TAACCAACTGAGCTAATGGGCC 35563674 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | | || ||| ||||| || | ||||||||||| |||||||||||||||| Sbjct 30507966 AATTAAAAGAGAA--AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 30508023 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 30508024 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 30508056 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | ||| ||| ||||| || | ||||||||||| |||||||||||||||| Sbjct 30554547 AATTAAAAGGAAA--AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTA 30554490 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 30554489 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 30554457 >seq26409 Length=3854 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1057 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 998 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 997 TGAGCTAATGGGCC 984 >seq8 Length=40886855 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 30122173 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 30122114 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 30122113 TGAGCTAATGGGCC 30122100 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || ||| ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 10578182 AATAAACAAA-AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 10578124 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 10578123 GACGCTCTAACCAACTGAGCTAATAGGCC 10578095 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| ||||| || | ||||||||||| |||||||||||||||||||||| Sbjct 40131224 AAAAAATATAAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGA 40131165 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 40131164 CGCTCTAACCAACTGAGCTAATAGGCC 40131138 >seq3 Length=27950219 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 716769 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 716710 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 716709 TGAGCTAATGGGCC 716696 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 25144262 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 25144203 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 25144202 CAACTGAGCTAATAGGCC 25144185 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||| ||| || |||||||||||||||||||||| ||| |||||| Sbjct 715740 TGGCCCATGCAGGTTTCGATCCTGCGGCCTTCGCGTTATTAGCACGACGTTCTAACCAAC 715681 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 715680 TGAGCTAATGGGCC 715667 >seq2 Length=28351830 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || ||| ||||| || | ||||||||||| |||||||||||||||||||| Sbjct 17745680 AATAAACAA--AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCAC 17745623 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 17745622 GACGCTCTAACCAACTGAGCTAATAGGCC 17745594 >seq5 Length=22804910 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 18953166 AAAGTGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 18953107 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 18953106 CAACTGAGCTAATAGGCC 18953089 >seq7 Length=29178675 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| | Sbjct 29158699 AAATATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 29158640 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 29158639 CCAACTGAGCTAATAGGCC 29158621 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | ||||||||||| |||||||||||||||||||||||||||| || Sbjct 29158849 AAAATGGCCTATACAGGGATCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 29158790 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 29158789 CAGCTGAGCTAATAGGCC 29158772 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261402695933596