Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2782 187 4e-43 seq1 149 1e-31 seq18886 136 6e-28 seq8 134 2e-27 seq19232 123 4e-24 seq4 122 1e-23 seq5 111 2e-20 >seq2782 Length=2109 Score = 187 bits (206), Expect = 4e-43 Identities = 202/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || |||||||| |||||||||||||| || || Sbjct 762 CGCCAAGCGTCATCGTAAGGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 821 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| |||||||||||||||||| |||| || | |||| || |||| Sbjct 822 CCGTCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 881 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 882 CCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 941 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || ||||| || Sbjct 942 GCACGCCAAGAGGAAGACCGTGACTGCCATGGACGTAGTCTACGCCCTCAAGCGTCAGGG 1001 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 1002 ACGTACCCTGTACGGTTTCGGAGGTTAA 1029 >seq1 Length=25238555 Score = 149 bits (164), Expect = 1e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||||||||| ||||| || || |||||||| |||||| | ||||| | Sbjct 3887046 GAGATAACATTCAAGGAATCACAAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGTGGTG 3887105 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||||||||||| | | | |||| | |||||||| ||| Sbjct 3887106 TGAAGCGTATCAGTGGTCTGATCTATGAAGAGACTAGAGGTGTTCTCAAGATCTTTCTCG 3887165 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||| ||| || || || || |||||||| | | ||||| || || Sbjct 3887166 AGAATGTGATTCGTGACGCTGTTACA-TACACAGAGCACGCGAGGAGGAAGACGGTGACT 3887224 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | |||||| | || || || ||||| | ||||| |||| | || ||||| || Sbjct 3887225 GCAATGGATGTTGTTTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGG 3887280 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||||||||| || || || | |||||||| | ||||||| Sbjct 3855213 GAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGGTTGGCTCGTAGAGGTGGAG 3855272 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 3855273 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 3855332 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | || || |||||||||| | |||||||| ||| Sbjct 3855333 AGAACGTGATTCGTGACGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACTGTTACCG 3855392 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | | || || || ||| ||| Sbjct 3855393 CCATGGATGTTGTTTACGCGCTCAAGAGACAAGGAAGAACTCTCTACGGATTCGGAGGTT 3855452 Query 16698 AA 16699 || Sbjct 3855453 AA 3855454 >seq18886 Length=14578 Score = 136 bits (150), Expect = 6e-28 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||||||||| |||| || || |||||||| |||||| | ||||| | Sbjct 14344 GAGATAACATTCAAGGAATCACAAAGCATGCGATTCGTCGTCTTGCTCGTAGAGGTGGTG 14403 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| ||||||| | | |||| | |||||||| ||| Sbjct 14404 TGAAGCGTATCAGTGGTCTGATCTACGAAGAGACCAGAGGTGTTCTCAAGATCTTTCTCG 14463 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| ||| | ||| || |||||||| | | ||||| || || Sbjct 14464 AGAATGTGATTCGTGACGCTGTTACCTACACAGAGCACGCGAGGAGGAAGACGGTGACTG 14523 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | |||||| | || || || ||||| | ||||| |||| | || ||||| || Sbjct 14524 CAATGGATGTTGTTTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGG 14578 >seq8 Length=40886855 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||||||||||||||||||||| || || | |||||||| | ||||||| Sbjct 33235932 GAGACAACATCCAAGGAATCACCAAGCCAGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 33235991 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| ||| | |||||||| | Sbjct 33235992 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTTCTCAAGATCTTTTTGG 33236051 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| ||| | || ||||||||||| | | |||||||| ||| Sbjct 33236052 AGAATGTGATTCGTGACGCTGTGACTTACACCGAGCACGCAAGGAGGAAGACTGTTACCG 33236111 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | | || || || ||| ||| Sbjct 33236112 CCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGAACTCTCTACGGATTCGGAGGTT 33236171 Query 16698 AA 16699 || Sbjct 33236172 AA 33236173 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||| | Sbjct 33480014 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGGAGATTGGCTCGTAGAGGTGGTG 33479955 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| ||| | |||||||||| |||| ||| | |||||||| | Sbjct 33479954 TGAAGCGTATCAGTGGTTTGATTTATGAAGAGACACGTGGAGTTCTCAAGATCTTTTTGG 33479895 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | || || |||||||||| | |||||||| ||| Sbjct 33479894 AGAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTAGGAGGAAGACTGTTACCG 33479835 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || || || | || | ||||| | | | || || || ||| ||| Sbjct 33479834 CCATGGATGTTGTTTACGCGCTCAAGAGACAAGGAAGGACTCTCTACGGATTCGGAGGTT 33479775 Query 16698 AA 16699 || Sbjct 33479774 AA 33479773 >seq19232 Length=5069 Score = 123 bits (136), Expect = 4e-24 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||| ||| ||||||||||| |||| || || |||||||| |||||| | ||||| | Sbjct 2026 GAGATAGCATTCAAGGAATCACAAAGCATGCGATTCGTCGTCTTGCTCGTAGAGGTGGTG 2085 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| ||||||| | |||| | |||||||| ||| Sbjct 2086 TGAAGCGTATCAGTGGTCTGATCTACGAAGAGACCAAAGGTGTTCTCAAGATCTTTCTCG 2145 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || ||| ||| || || || || |||||||| | | ||||| || || Sbjct 2146 AGAATGTGATTTGTGACGCTGTTACA-TACACAGAGCACGCGAGGAGGAAGACGGTGACT 2204 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || || || ||| | | ||||| |||| | || ||||| || || Sbjct 2205 GCAATGGATGTTGTTTACGCTTTGGAGAGGCAAGGACGTACTCTCTACGGTTTCGGTGGT 2264 Query 16697 TAATC 16701 ||||| Sbjct 2265 TAATC 2269 >seq4 Length=23266485 Score = 122 bits (134), Expect = 1e-23 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| ||||| || || ||||| || || ||| | | || | | ||| Sbjct 14881610 CTCCGTGATAACATTCAAGGGATTACGAAGCCGGCGATTCGTAGATTAGCGAGAAGAGGT 14881551 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | ||||||| |||| ||||| | ||| | |||||||||||| || Sbjct 14881550 GGTGTGAAGCGTATAAGTGGATTGATCTACGAAGAAACTCGAGGTGTTTTGAAGATTTTT 14881491 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || || | ||||||| | || || ||||| || | | ||||||||| Sbjct 14881490 CTTGAGAATGTGATTCGTGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACTGTC 14881431 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | ||||| || | ||||||| || || Sbjct 14881430 ACGGCGATGGATGTTGTTTATGCTTTGAAGAGACAAGGACGAACTCTTTATGGATTCGGT 14881371 Query 16694 AGTTAAT 16700 ||| || Sbjct 14881370 GGTTGAT 14881364 >seq5 Length=22804910 Score = 111 bits (122), Expect = 2e-20 Identities = 187/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| |||||||||||||| || ||||| || || Sbjct 14397135 GCAAAGAGACATCGGAAAGTTCTCAGAGACAACATCCAAGGAATTACGAAGCCTGCGATT 14397076 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || | | || || || ||| | || ||| ||| |||| ||||| | | Sbjct 14397075 CGTCGTTTAGCGAGAAGAGGAGGCGTGAAGAGAATCAGTGGTTTGATCTACGAAGAAACT 14397016 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | |||||||| || ||| ||| || | ||| || | || || ||| Sbjct 14397015 CGCGGTGTTCTCAAGATCTTTCTAGAGAACGTGATTCGTGACGCCGTTACTTACACGGAG 14396956 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || ||||| || | |||||| |||| ||||| | || | ||||| Sbjct 14396955 CACGCTCGCCGGAAAACTGTGACGGCGATGGATGTCGTTTATGCTCTCAAGAGACAAGGA 14396896 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | ||||||| || || ||| || || Sbjct 14396895 AGAACTCTTTATGGATTCGGTGGTTGATTTT 14396865 Score = 107 bits (118), Expect = 3e-19 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 6293451 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGAAGATTGGCTCGTAGAGGTGGAG 6293510 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 6293511 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 6293570 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| || | || || |||||||| | | ||||| || || Sbjct 6293571 AGAACGTGATTCGTGACGCGGTTACTTACACAGAGCACGCGAGGAGGAAGACGGTGACTG 6293630 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 6293631 CCATGGATGTTGTTTACGC 6293649 Score = 98.7 bits (108), Expect = 2e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||||||||| ||||| || || || | |||||||| | ||||||| Sbjct 6234530 GAGACAACATCCAAGGAATCACTAAGCCTGCGATTCGGAGATTGGCTCGTAGAGGTGGAG 6234589 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| | || || |||| || |||| |||| || | |||||||| | Sbjct 6234590 TCAAGCGTATTAGCGGTCTGATCTACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGG 6234649 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| || | || || |||||||| | | ||||| || || Sbjct 6234650 AGAACGTGATTCGTGACGCGGTTACTTACACAGAGCACGCGAGGAGGAAGACGGTGACTG 6234709 Query 16638 CCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 6234710 CCATGGATGTTGTTTACGC 6234728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79049808780303