Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq20831 509 2e-139 seq3 499 4e-136 seq7 224 1e-53 seq6 86.0 8e-12 >seq20831 Length=3535 Score = 509 bits (564), Expect = 2e-139 Identities = 588/787 (75%), Gaps = 6/787 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || || || || || | || |||||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || ||||| ||||| || Sbjct 724 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || || ||||| |||| ||| || ||| || || || | || || || || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 548 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 |||||||||||||| || ||||||| |||||||| || || ||||||||| ||||| | Sbjct 547 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 488 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | ||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 487 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 428 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| ||||| ||| Sbjct 427 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 368 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || | ||||| |||| ||||| ||| |||||||||||| || || Sbjct 367 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 308 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| |||||||| || ||||||||||| ||||| Sbjct 307 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 248 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || |||||||| || || ||||| || ||||| || || | || |||||||||| Sbjct 247 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCAT 188 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || || |||||| | | | || || || || ||||| || | Sbjct 187 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 128 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| || Sbjct 127 GGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 68 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 67 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 8 Query 136151 GCTGCTT 136157 || |||| Sbjct 7 GCGGCTT 1 >seq3 Length=27950219 Score = 499 bits (552), Expect = 4e-136 Identities = 724/1013 (71%), Gaps = 21/1013 (2%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATC--GCTTTGTATTTGTGGGTTGGTCTGGACTACTACT 137932 ||||||||||| | | ||| | ||||||| ||||| ||||||||||| ||| | || Sbjct 12152892 TGGATGACTGGTT--ACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCT 12152835 Query 137933 TTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAG 137992 ||||| ||| ||||| || | || | ||| | || || |||| ||||| || Sbjct 12152834 CTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTTGTAACTTC 12152775 Query 137993 CTGGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGC 138049 ||||| || || || ||||| ||||| || | ||||| ||||| || || Sbjct 12152774 ATGGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTTTAAACCGC 12152718 Query 138050 AGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 138109 || |||||||||||||| || | | | |||||| | | |||| ||||||| ||| Sbjct 12152717 TGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGTCTTGA 12152658 Query 138110 GTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCT 138169 | ||| ||||| | || |||| ||| | || || |||| | ||||||| || || Sbjct 12152657 AGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTTGCTCT 12152598 Query 138170 CCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGG 138228 | |||| || ||| | || | || ||| | || || ||||| | |||| || | Sbjct 12152597 CTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGT 12152538 Query 138229 TAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAG 138286 | || | || || || || |||||||||||||||||||| |||||||| || || Sbjct 12152537 T---CAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTTTT 12152481 Query 138287 CGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGT 138346 || |||| || ||||| |||||||||| ||||||||||||| || |||||||| Sbjct 12152480 TGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 12152421 Query 138347 GGCAGCAATCTTCCGATTCCTGTTGTTCCTTC--AGGGTTTCCATAACTGGACCCTCAAC 138404 || || || || |||||| | | || ||| |||||||| |||| |||| | ||| Sbjct 12152420 AGCGGCTATATTTCGATTCATCCTTTT--TTCCAAGGGTTTC-ATAATTGGATATTGAAC 12152364 Query 138405 CCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCAT 138464 || |||||||||||||| || | ||| | || || | |||||||| || ||||||||| Sbjct 12152363 CCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCAT 12152304 Query 138465 GGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCA 138524 |||||||| |||||||||||||| | ||||||||| || ||||||| || || Sbjct 12152303 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 12152244 Query 138525 TTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCG 138584 ||| | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| Sbjct 12152243 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 12152184 Query 138585 CAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTT 138644 || ||||||| |||||||| ||||| |||||| | || |||| |||| | ||||| Sbjct 12152183 TAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGTA 12152124 Query 138645 CCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGA 138704 | || | ||| | |||| ||| | |||| | | || || ||| | |||||| | Sbjct 12152123 TCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGT 12152064 Query 138705 GCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTC 138764 || ||||| ||||| || || |||| |||||||| |||||| | |||| ||||| ||| Sbjct 12152063 GCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTTC 12152004 Query 138765 TACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAA 138824 | || || || |||||| | || |||||| | ||||| |||||||| || | ||| | Sbjct 12152003 AATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAAG 12151944 Query 138825 CCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| |||||| || | || | ||| || || | ||| | || |||||||| Sbjct 12151943 CCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq7 Length=29178675 Score = 224 bits (248), Expect = 1e-53 Identities = 218/278 (78%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 138371 GTTCCTTC--AGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCA 138428 |||| ||| |||||||| |||| ||||| ||||| |||||||||||||| || || Sbjct 25949514 GTTCTTTCCAAGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCC 25949456 Query 138429 GGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTG 138488 ||| | || || | |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 25949455 GGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 25949396 Query 138489 TATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAA 138548 | ||||||||| || ||||||| || || ||| | || ||||||| |||||| Sbjct 25949395 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 25949336 Query 138549 ACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGT 138608 || ||||||||||| || |||||||| | ||||| ||||||||||| |||||||| Sbjct 25949335 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCC 25949276 Query 138609 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCC 138646 ||||| |||||| | || ||||||||| | ||||| || Sbjct 25949275 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 Score = 109 bits (120), Expect = 7e-19 Identities = 286/436 (66%), Gaps = 19/436 (4%) Strand=Plus/Plus Query 138453 TGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAAT 138512 ||||||| ||||||||||| | |||||| || | | | ||||| || ||||| Sbjct 20870529 TGTGCTACTCATGGTGCTATTTAAAAAAATATTTAATTTAAGGATGGTGATGGTGCAAAT 20870588 Query 138513 ACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAAC 138572 || || || ||| | | |||||| | | |||| |||| |||| | | |||||| Sbjct 20870589 ACATTCCGTGCTTTTAACTCAACTCAAACTGGAAAAACTTATTGAATGCTCAACGCTAAC 20870648 Query 138573 CGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTT 138632 || | ||||| ||||| | ||| |||||||| || |||||| | || || ||| Sbjct 20870649 CGCTTTTGGTCACAAATATCTGGGGTTGCTTTTTCCGGTATACGTTGGTTACA-TTTTTT 20870707 Query 138633 ATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCT 138692 || | ||| | | || || ||| | | | |||| | || | | | || || ||| Sbjct 20870708 ATTTTATTTCTACTAGTAATTGGTTTATAAATGAGTACTCTTAGAGTAGTCGGCCTAGCT 20870767 Query 138693 CTTAACCTAC------GAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGAT 138746 | ||||||| | || ||||| ||||| || || ||| || ||||||| |||||| Sbjct 20870768 TTGAACCTACTGGGCAGTGCCTATGACTTCGTTTC-CATGAATTTTGTGCAGCGGAAGAT 20870826 Query 138747 CCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGG 138806 || | ||||| | || || || || | || ||||| | ||||| ||| Sbjct 20870827 CC-----------CTTTCTATAATAAAAATATCTTTTTAAACGAAGGCATTCGTGCTTGG 20870875 Query 138807 ATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGA 138866 ||||| || ||||||||| | || ||| || | || ||| ||||| | | | | Sbjct 20870876 ATGGCGGCTCAAGATCAACCTTATGAGAACCTTATATTCTTTGAGGAAGTTCTACTACGT 20870935 Query 138867 GGCAACGCTCTGTGAT 138882 || |||||| | |||| Sbjct 20870936 GGAAACGCTTTTTGAT 20870951 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 135416 GGTTGGTTTGGAACGCTGATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGT 135474 || |||||||| ||||||||||||| ||| | | | || || | |||| | | Sbjct 27053880 GGATGGTTTGGTGTTTTGATGATTCCTAC-CTTATTGACCGCAACTTCCGTTTTTAATAT 27053822 Query 135475 TGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTC 135534 || ||||| ||| | ||||| || |||||||| || || || ||| ||||| |||| || Sbjct 27053821 CGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAATCTGTTTCTGGATC 27053762 Query 135535 TCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCT--AGCAACGCCATC 135592 ||| | || ||||| || || || || ||||| |||| ||| || |||| || || Sbjct 27053761 TCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCAGCA--GCTAT- 27053705 Query 135593 GGCCTTCACTTCTATCCCATCTGGGAAGC 135621 | | || || || || ||||||||||| Sbjct 27053704 TGTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627750008758400