Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq20831 360 3e-94 seq6 89.7 8e-13 >seq20831 Length=3535 Score = 360 bits (398), Expect = 3e-94 Identities = 509/713 (71%), Gaps = 2/713 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 744 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 686 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 685 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 626 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 625 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 566 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 565 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 506 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 505 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 446 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 445 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 386 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| || ||||| ||| | |||||||| | ||||| || || || Sbjct 385 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCT 326 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 325 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 266 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 265 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 206 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 205 TTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 146 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||||||||||||||| || || ||||| || Sbjct 145 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTA 86 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321 ||||| ||||| || || || || | |||||||| ||||| |||||||| Sbjct 85 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 33 >seq6 Length=37079636 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | ||||| || | ||| | | | ||||| | |||| Sbjct 27053882 TTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTAAT 27053824 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || | ||||| || ||||| || || || |||||| | || |||| Sbjct 27053823 ATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAATCTGTTTCTGGA 27053764 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| ||||| || || || ||||| || |||| ||||| || || Sbjct 27053763 TCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCAGCAGCTAT- 27053705 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCA 211818 |||| || || || || |||||||||||| Sbjct 27053704 TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807274867306760