Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq20831 407 2e-108 seq3 260 2e-64 seq6 98.7 1e-15 >seq20831 Length=3535 Score = 407 bits (450), Expect = 2e-108 Identities = 559/776 (72%), Gaps = 4/776 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 724 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 607 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 606 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 547 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 |||||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 546 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 487 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 486 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 427 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || ||| || Sbjct 426 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTG 367 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 366 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 307 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 306 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 247 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| || | || ||||| ||||| | Sbjct 246 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATG 187 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| | || || ||| | | ||||| || || || || || || | || | | Sbjct 186 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 127 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | |||||||||||||||||||| || |||||||| ||||||||||| || || | Sbjct 126 GTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 67 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 171439 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 66 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 11 >seq3 Length=27950219 Score = 260 bits (288), Expect = 2e-64 Identities = 689/1051 (66%), Gaps = 26/1051 (2%) Strand=Plus/Minus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| | | || || || | | Sbjct 12152913 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAG 12152854 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| || | || | || | ||||||| || Sbjct 12152853 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAG 12152794 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | | || || || || |||||||| || ||||| | || || ||| | || || Sbjct 12152793 GTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 12152734 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||| ||| || || | || || |||| | || | | | ||| | | |||| Sbjct 12152733 GCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGT 12152674 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| | ||| |||||| ||||| || || |||| ||||||||| || || | Sbjct 12152673 TACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCT 12152614 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 | ||||| || | | || | |||| | | ||| |||| ||| | | || |||| Sbjct 12152613 AGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTG 12152554 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || ||| | || ||||| || ||| | |||||||| | || | Sbjct 12152553 AACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCG 12152494 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || || | ||||| |||||| | ||||| | |||||||||| || | Sbjct 12152493 CTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGC 12152434 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCG--TTATATTTTATTCATACAGGGTTTCCACAA 172321 || |||||||| || || || ||||| | || ||| ||| || || || || || Sbjct 12152433 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTC---CAAGGGTTTCATAA 12152377 Query 172322 TATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACT 172381 | | | || ||||||||||||||||| || | ||| |||| || | || | || Sbjct 12152376 TTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCT 12152317 Query 172382 ATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACAC 172441 ||| || || |||||||| || ||| | || || || | |||||| Sbjct 12152316 ATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA--------------- 12152272 Query 172442 TGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAAC 172501 || | | | | ||| |||| ||| | || || | || || || | |||||||| Sbjct 12152271 TG--GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAAC 12152218 Query 172502 TTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAA 172561 |||| ||| | || |||||| | || |||||| | | ||||| | || ||||| || Sbjct 12152217 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAA 12152158 Query 172562 CAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATC 172621 ||| | | ||||| ||| |||||| || ||| | || | ||| | |||| | Sbjct 12152157 TAAACGTTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGC 12152098 Query 172622 TATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGAT 172681 | | || | || || || || | ||||| | || || ||||| || || || || | Sbjct 12152097 TCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAAC 12152038 Query 172682 AAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGA 172741 | ||||| ||||| | | ||||| || ||| | ||||| || |||||| | || || Sbjct 12152037 CCGTGCAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGA 12151978 Query 172742 AGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGA 172801 |||||| | || |||||| | || | ||| | || ||||| ||| || | |||| || Sbjct 12151977 AGGTATTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGA 12151918 Query 172802 AGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 || || | ||||| || ||||| || ||| Sbjct 12151917 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 12151887 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 170693 AATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGC 170751 ||||| | ||| |||| ||||||||||| || ||||| || | ||| | || || | Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAAC 27053837 Query 170752 TGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGA 170811 | | ||| | | | |||||||| ||| |||||||||| ||||| || || || | || Sbjct 27053836 TTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGA 27053777 Query 170812 ACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCAT 170870 | | ||| | || ||| ||||| ||||| ||||| || || || ||||| | |||| Sbjct 27053776 ATCTGTTTCTGGATCTCTTCTT-TATGGAAACAATATTATTTCAGGTGCCATTATTCCTA 27053718 Query 170871 CTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCA 170914 ||||| || || | || || || || || |||||||||||| Sbjct 27053717 CTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570070838314440