Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 253 3e-62 >seq5 Length=22804910 Score = 253 bits (280), Expect = 3e-62 Identities = 605/902 (67%), Gaps = 12/902 (1%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || ||||| || | ||||| ||||||||||| || |||| || || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| ||||||| ||||| | ||| ||| | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 ||| |||||||| || || || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | ||||| || || | ||| ||| ||||| |||||||| | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 33252 AGATCTAACGGTTTCTTCACTCGG--TGG-ATGCAATAAATGTTTAAACATCAAACATGC 33308 ||| | || |||| ||||| | ||| | | || | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 |||||| ||||| | ||| |||||||| |||| |||||| || || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| || ||||| || |||||||| || || ||| ||| || ||||| ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 33487 ||| || ||| || || | | | || | | | | | ||| ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 2412494 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | |||||| || ||||| | |||||||| |||||||| || ||| || |||| Sbjct 2412495 TCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGAT 2412554 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||| || ||||||| | ||||| |||| | |||| |||||| || |||| Sbjct 2412555 GATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAAT 2412614 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | || || ||||| || || || ||||||||||| | || |||| | ||||| | Sbjct 2412615 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACAT 2412674 Query 33668 CTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| ||| |||||| || | ||||| || ||||||||| || || || || Sbjct 2412675 CTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAAA 2412733 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGAT 33785 || | ||| ||||| || || | ||| || | ||| || || | ||| ||| | | Sbjct 2412734 GCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGTT 2412792 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 |||| || | |||||||||||| ||||||| |||||||| || || || || ||||| Sbjct 2412793 GTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACAT 2412852 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 33905 | |||||| | || || ||||| || ||| ||||| | ||| |||| | ||| Sbjct 2412853 TTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGGTGTTGGAGTAAG 2412912 Query 33906 GA 33907 || Sbjct 2412913 GA 2412914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622730951666360