Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq4 105 6e-18 seq3 93.3 4e-14 seq5 86.0 6e-12 seq7 82.4 7e-11 >seq6 Length=37079636 Score = 105 bits (116), Expect = 6e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| ||||| | ||||| ||| | || ||| | ||| | || | | | Sbjct 33565084 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 33565143 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| |||||| ||||| |||||||| ||||| || || Sbjct 33565144 -GACACCATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCA 33565202 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATA 26946 ||| |||||||| | | || |||||||| || |||| | ||| || ||| | |||| Sbjct 33565203 ACAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAA-CGCTTGCGGATTATA 33565261 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || ||||| || | ||| |||| || | || ||||| || Sbjct 33565262 ACATTCAGAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 33565310 >seq4 Length=23266485 Score = 105 bits (116), Expect = 6e-18 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || |||| | || || ||||| ||| Sbjct 12669084 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 12669143 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | | ||| | ||| || || ||||| || ||||| |||||| | ||||| ||| | Sbjct 12669144 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 12669202 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| |||||||| |||| Sbjct 12669203 GAGGCTTAGAGGTGGAA 12669219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || ||||||| |||| | |||||| Sbjct 22703431 AAGATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATCACTCTCGAGGTTGAATCA 22703372 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||| || ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 22703371 TCCGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGAT 22703312 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||| || | || | || ||| |||||||||||||| | | | | ||||| Sbjct 22703311 CAACAACGATTAATCTTCGCCGGAAAACAACTCGAAGACGGACGTACTCTGGCTGACTAC 22703252 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | ||||| ||||| Sbjct 22703251 AACATCCAGAAGGAATCAACGCTTCATCTCGTCCT 22703217 >seq3 Length=27950219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| || ||| | ||||| ||| | || ||| | ||| | || | | | Sbjct 14805975 ATGCAGATATTTGTCAAGACACTTACTGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 14806034 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||| || | || ||| |||||| ||||| ||||| || ||||| || | Sbjct 14806035 T-ACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACTA 14806093 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATA 26946 ||| |||||||| | | || |||||||| || |||| | ||| || ||| | |||| Sbjct 14806094 ACAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAA-CGCTTGCGGATTATA 14806152 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| || ||||| || | ||| |||| || | || ||||| || Sbjct 14806153 ACATTCATAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 14806201 >seq5 Length=22804910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || | ||||| |||| | |||||| Sbjct 22133578 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTTGAATCATCA 22133637 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| ||||| ||||| ||||| || || || || || Sbjct 22133638 GATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCGGACCAG 22133697 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || || |||||||||||||| | | | || ||||| ||| Sbjct 22133698 CAACGTTTAATCTTCGCTGGAAAACAACTCGAAGACGGACGTACTCTCGCTGACTACAAC 22133757 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| || | ||||| ||||| Sbjct 22133758 ATCCAGAAAGAATCAACGCTTCATCTTGTCCT 22133789 >seq7 Length=29178675 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAA 26826 ||||||| | ||||| |||||| | ||||| ||| | || ||| | ||| | || | | Sbjct 2570613 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570672 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 | |||| ||| || | ||||| ||||| || || |||||||| ||||| || Sbjct 2570673 A-GACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCGGACG 2570731 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 |||| || ||||| | || || ||||||||||| |||| | | | | || || | Sbjct 2570732 AACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGTACTCTTGCGGATTACA 2570791 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || || || ||| | || || ||||| Sbjct 2570792 ACATCCAGAAGGAGTCAACTCTACACCTTGTCCT 2570825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478496238331120