Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 140 8e-28 seq5 118 3e-21 seq6 111 4e-19 seq7 102 2e-16 >seq2 Length=28351830 Score = 140 bits (154), Expect = 8e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| ||||| ||||| || ||| ||| || Sbjct 16613883 ATGGCACTTCCTCCATGCCA-CATGTTTGCACAGTTCTATGTTGCAGAAGGGGAGCTCTC 16613941 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 16613942 ATGTCAAATGTATCAGCGTTCAGCGGATATGGGTCTTGGTGTGCCGTTTAACATTGCTTC 16614001 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| || ||||||| | |||| || ||||| || || Sbjct 16614002 CTACTCTCTTCTTACTTGCATACTCGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTAT 16614061 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCA 111886 || ||||| || ||||| ||||| |||| ||| || Sbjct 16614062 CCATGTTATTGGGGATGCTCATGTGTACAAAAATCA 16614097 >seq5 Length=22804910 Score = 118 bits (130), Expect = 3e-21 Identities = 313/475 (66%), Gaps = 11/475 (2%) Strand=Plus/Minus Query 22481 CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCAT 22540 ||||||| |||||| | | || || ||| |||||||| || ||||| ||||| | | Sbjct 2412473 CATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCT 2412414 Query 22541 TTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATG 22600 | ||| | || || ||||| || ||||||| | | ||||| ||| |||| || || || | Sbjct 2412413 TCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTAACTTTCTCTAACG 2412354 Query 22601 AGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA---TCGGA 22657 | ||||| |||| || ||| | || ||||| || ||| || | || || | Sbjct 2412353 AATTAATCTCAAGAGACGAAGGTTTACACTGTGATTTCGCTTGTTTGATTTACACTCTGT 2412294 Query 22658 ATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTG 22717 | || || | ||| | |||| || |||| || |||| |||| Sbjct 2412293 TACGTACCA------AGCTTAGTGAGGAAAGAGTGAAGTCTATTGTTTGCGATGCGGTTG 2412240 Query 22718 AACTTGAACGTCTATTTATTTGCGAGGCGTTACCA-GTAAGTCTCATTGGTATCAATGCC 22776 | |||| | ||| | || || ||| | || || || | ||||||| |||| Sbjct 2412239 AGATTGAGAGAGAGTTTGTATGTGAAGCGCTTCCTTGTGCGT-TGGTTGGTATGAATGGT 2412181 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 |||| |||||| |||||| | |||||||| ||| | | ||| | | || || ||| Sbjct 2412180 GAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTTATGTGCGCTTGGGTAT 2412121 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | || ||| || |||||| ||||| |||||||| | ||| | |||| Sbjct 2412120 GGTAAAGTGTATGGTGTGAGTAATCCTTTTGATTGGATGGAGTTGATTAGTTTACAAGGG 2412061 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGG 22951 ||||| ||||| || ||||| ||||||||||| || || ||||| |||||||| Sbjct 2412060 AAGACTAATTTTTTTGAAAAGAGAGTTGGTGATTATCAGAAAGCTTCTGTTATGG 2412006 >seq6 Length=37079636 Score = 111 bits (122), Expect = 4e-19 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| || | ||| ||||| || | |||||| |||| | Sbjct 31021831 ATGAAAGATGACAGCATCGAGGGCATATATGAAACACTCAAAGAGTGTGCTGTTATAAGC 31021772 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTTACAT 363740 || ||| || || |||||||| || | || ||| | |||||| | | | |||||||| Sbjct 31021771 AAATCTGCTGGTGGCATTGGTGTTTCAGTTCATAATATCCGTGCAACTGGA-AGTTACAT 31021713 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| |||||| ||| || ||||| | ||||| ||||||||||| || | |||| Sbjct 31021712 TCGAGGCACAAATGGAACGTCAAATGGTATTGTTCCAATGCTTCGTGTATTCAATGATAC 31021653 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || ||||| || ||||| ||| | |||||| Sbjct 31021652 TGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 31021614 >seq7 Length=29178675 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111592 ATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGA 111651 |||| ||| | | || |||||||| || | ||| || ||||| ||| || |||| Sbjct 24471049 ATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGA 24470990 Query 111652 ACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG 111711 | || || | || ||||||||||| ||||| || | | | |||||||||| Sbjct 24470989 ATCCTGCTGATCTTAAACTGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTATG 24470930 Query 111712 TACACGACGGGATG-CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGT 111770 | ||| ||| |||||||| |||||||||||||| || || || || |||||||| Sbjct 24470929 TTG-CGAATGGAGAACTTTCATGTCAAATGTATCAGCGTTCAGCCGACATGGGTCTTGGC 24470871 Query 111771 GTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || |||||||| ||||| ||| | || ||||| ||| | ||||||| Sbjct 24470870 GTACCGTTTAACATTGCCTCATACTCTCTTCTTACGTGCATTCTCGCTCA 24470821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302889846016922