Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq3 111 1e-19 seq4 98.7 9e-16 >seq6 Length=37079636 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | |||||| | ||||| ||| | Sbjct 33565084 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 33565143 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| || ||| Sbjct 33565144 GACACCATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 33565203 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||||| || | | || || ||||| || |||| | |||| || |||||||| Sbjct 33565204 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCG-AACGCTTGCGGATTATAA 33565262 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || ||||| || | ||||| ||| || | ||||||| || Sbjct 33565263 CATTCAGAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 33565310 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || ||| | ||||| ||| |||||||| | ||||||||| | |||||||| Sbjct 33564865 TTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCAGACACCATT 33564924 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || ||| || ||| ||||| ||||| || ||||| || || ||||| ||| Sbjct 33564925 GACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGAGGCTG 33564984 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | ||| ||||| ||||| |||| ||| | ||||| ||||| || || Sbjct 33564985 ATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAACATCCAGAAG 33565044 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || | || || || | || ||||||||||| Sbjct 33565045 GAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGG 33565082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | || ||| | ||||| || | | Sbjct 19970215 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAAGTTGAAAGCTCC 19970156 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || |||||||| || || ||||| || || Sbjct 19970155 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 19970096 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||||| || ||| ||||||||||| || | ||||| | ||| || || Sbjct 19970095 CAAAGATTGATTTTCGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 19970036 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||| ||||| | ||||| ||||| Sbjct 19970035 ATCCAGAAAGAGTCTACTCTCCATTTGGTGTT 19970004 >seq3 Length=27950219 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||| ||| | |||||| | ||||||||| | Sbjct 14805975 ATGCAGATATTTGTCAAGACACTTACTGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 14806034 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||| || | || ||| |||||| ||||| ||||| || ||||| || || Sbjct 14806035 TACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACTAA 14806094 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 |||||||| || | | || || ||||| || |||| ||| || ||| ||||||| Sbjct 14806095 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAA-CGCTTGCGGATTATAA 14806153 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || ||||| || | ||||| ||| || | ||||||| || Sbjct 14806154 CATTCATAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 14806201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||| ||| | || || |||| ||||| | Sbjct 5226820 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 5226761 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| || |||||||| || |||| || ||| Sbjct 5226760 GACACCATTGACAACGTCAAAGCCAAGATCCAAGATAAAGAAGGAATCTCTCCGGACCAA 5226701 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||| || || || || |||| | | | ||||| || Sbjct 5226700 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAGGATGGTCGTACTCTTGCGGATTACAAT 5226641 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| ||| |||| Sbjct 5226640 ATCCAAAAGGAATCAACACTTCA 5226618 >seq4 Length=23266485 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||||| | || |||||||| ||| Sbjct 12669084 GACAAAGAAGGTATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAACTTGAA 12669143 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| | ||| ||||| ||||| || ||||| ||||| ||||| | || || Sbjct 12669144 GATGGTCG-AACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTTGTCTT 12669202 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 12669203 GAGGCTTAGAGGTGGA 12669218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429790484264505