Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq3 89.7 4e-13 seq4 87.8 1e-12 >seq6 Length=37079636 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || ||||| || || || |||||||||||| Sbjct 19969989 CCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCC 19970048 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | ||| || || || |||| | | || |||||| ||| Sbjct 19970049 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGA 19970108 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| |||| ||| || | | | | |||||| | || | Sbjct 19970109 ATACCCTCTTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACT 19970168 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 19970169 TCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || || |||||||| || |||||||||||||| Sbjct 19969761 CCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCT 19969820 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || ||| |||| || ||||| |||||| ||| Sbjct 19969821 AAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 19969880 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || || ||| || | | | | |||||| | ||| Sbjct 19969881 ATCCCTTCTTTGTCCTGGATCTTGGC--CTTGACGTTGTCAATAGTGTCTGAGCTCTCGA 19969938 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || |||| || ||||| || |||||||| Sbjct 19969939 CCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 >seq3 Length=27950219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || || ||||||||||| |||||||| || ||| Sbjct 5226822 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCC 5226881 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||||| || ||| | ||||||| ||||||||| ||| Sbjct 5226882 AAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGG 5226941 Query 16829 ACGCCCTCTTTGTC 16842 | || |||||||| Sbjct 5226942 ATTCCTTCTTTGTC 5226955 >seq4 Length=23266485 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || ||||||||||| || | || | ||||| | |||| Sbjct 5738665 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCTAAAGTCCGACCATCCTCTAGTTGT 5738606 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || | | | || |||| ||||||||||| ||| | || || ||||| ||| | | Sbjct 5738605 TTTCCGGTAAAGATTAGCCTCTGTTGGTCCAGAGGGATTCCTTCCTTGTCTTGAATCTTC 5738546 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| | | | | | |||||| | ||| ||| | ||| || ||||| || || Sbjct 5738545 GCCTTGATGTTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTA 5738486 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| |||||||| Sbjct 5738485 AGCGTCTTGACAAATATCTGCAT 5738463 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||||||||| ||||||||||| || | || | | ||||| | ||| Sbjct 5744945 TGCAGAGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTACGGCCATCCTCGAGCTGT 5744886 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || |||||| | ||||| | || || ||| ||| | || || ||||| || || Sbjct 5744885 TTACCCGCAAAGATAAGTCTCTTCTGTTCCGGAGGGATCCCTTCCTTGTCTTGAATCTTA 5744826 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | ||||| | ||| ||| | ||| |||||||| || Sbjct 5744825 GCT--TTAACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATGGTTTTATTGG 5744768 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||||||| |||||||| Sbjct 5744767 TAAGCGTCTTGACAAATATCTGCAT 5744743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404950894295290