Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 134 9e-27 seq2 131 1e-25 seq3 129 4e-25 seq4 113 3e-20 seq8 104 2e-17 seq1 104 2e-17 seq5 91.5 1e-13 >seq6 Length=37079636 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||||||||||||||| ||||| || || || |||||||||| Sbjct 13447623 TACCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAG 13447564 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || | || || ||||| || || | | || || || | | Sbjct 13447563 CCAAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAG 13447504 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || ||| ||||||||| | | |||||| ||||||| Sbjct 13447503 GAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAA 13447444 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || || ||||||||||| || || || |||||||| Sbjct 13447443 CTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | ||||||||| || || ||||| ||||| || ||||| | | Sbjct 33565310 CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCG-C 33565252 Query 38151 AAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || |||||| || || | ||||||||| ||||| || || | ||||| || | Sbjct 33565251 AAG---CGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGG 33565195 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 |||| ||||| ||||| ||| || ||| || || | | || ||| || || Sbjct 33565194 AGGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTC 33565135 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| |||||||||||||| || | ||||||||| || |||||||| Sbjct 33565134 AACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||||||||| ||||| ||| || || |||||||| || | Sbjct 19969987 TACCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGG 19970046 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | | |||| || | ||| |||||||| || || | | ||| || || | | Sbjct 19970047 CCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAG 19970106 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || ||||||||| ||||| ||| || || | | || || ||||||| Sbjct 19970107 GAATACCCTCTTTGTCCTGGATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAA 19970166 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||| |||||||| || || || |||||||| Sbjct 19970167 CTTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||||| || | ||| |||||| ||||||||||| |||| Sbjct 13448143 TACCACCACGGAGACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAG 13448084 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || | || ||||| ||||| || || || || || || | | Sbjct 13448083 CCAAAGTCCGACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTG 13448024 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||| | | || ||| || || | Sbjct 13448023 GGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTCTCCA 13447964 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||||||| || ||||| |||||||| Sbjct 13447963 CCTCAAGAGTGATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCAT 13447915 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| ||||| || |||||| ||||| ||||| || | Sbjct 19969759 TACCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGG 19969818 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | || ||||| ||||| || || || || || || | | Sbjct 19969819 CTAAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAG 19969878 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||| || || | | ||| ||| || || | Sbjct 19969879 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGA 19969938 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| |||||||| || ||||| |||||||| Sbjct 19969939 CCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| |||||||| ||||| || ||||||||||| | Sbjct 13447167 TACCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCG 13447108 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || ||||| || || || || || | | || ||||| | | Sbjct 13447107 CCAAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAG 13447048 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| ||| || || ||||| | || ||||| |||||| | Sbjct 13447047 GAATCCCTTCCTTATCCTGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCA 13446988 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | |||||||| || |||||||| Sbjct 13446987 CCTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||| | ||||||||| |||||| || ||||||||||| | | | ||| |||| || Sbjct 13447376 CACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTACGACCGTCCTC 13447317 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || ||||| || || || | | || ||||| | || | ||||| || || Sbjct 13447316 AAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTG 13447257 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||||| || | || || || ||| ||||| || | ||||||||||| Sbjct 13447256 AATCTTAGCTTTCACGTTATCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATAGTTTT 13447197 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| |||||||| ||||| || |||||||| Sbjct 13447196 ACCAGTCAAGGTCTTCACAAAGATCTGCAT 13447167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 7655178 CTCTCTTTTCAAAGTGCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 7655237 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||| |||| Sbjct 7655238 GCCCATATTTAACCTT 7655253 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| || | || ||||||||| |||||||| |||| Sbjct 13447915 TACCACCCCGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAG 13447856 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || ||||||||||| || | | || || || | | Sbjct 13447855 CCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTG 13447796 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || ||| |||||| || | | ||| || || || | Sbjct 13447795 GAATACCTTCCTTATCTTGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCCA 13447736 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 13447735 CCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| |||||| || || ||||| |||| | | ||| |||| || | ||| Sbjct 19970240 ATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCAAGTTG 19970299 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||||||||| || | | || ||||| | || | || || ||||| || || Sbjct 19970300 CTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCTTGGATCTT 19970359 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | | || || ||| ||||| || | |||||||| ||||| || Sbjct 19970360 AGCCTTAACGTTATCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATAGTCTTACCAGT 19970419 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 |||||| || ||||| |||||||| Sbjct 19970420 CAAGGTCTTAACGAAGATCTGCAT 19970443 >seq2 Length=28351830 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 2351656 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2351715 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2351716 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2351750 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 2341395 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2341454 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2341455 GCCCATATTTAGCCTT 2341470 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 2354879 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2354938 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 2354939 GCCCATATTTAGCCTT 2354954 >seq3 Length=27950219 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||||||||| ||||| || ||||| ||||||||| || |||||||||| Sbjct 5226820 TACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAG 5226879 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || | ||||| |||||||| || || | |||||| || | | Sbjct 5226880 CCAAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAG 5226939 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || || || || | ||| || || ||||| | Sbjct 5226940 GGATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGA 5226999 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||| || || || ||||| | ||||||||||| || ||||| Sbjct 5227000 CCTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Score = 98.7 bits (108), Expect = 7e-16 Identities = 172/247 (70%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 38075 ACAAATCCAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTG 38134 |||||| || ||| |||||||||| ||| | ||||||||| || || ||||| || Sbjct 14806216 ACAAATACATGCATC-CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTATG 14806158 Query 38135 AATATTGTAATCAGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTA 38190 ||| || ||||| | ||| |||||| || || | ||||||||| ||||| || | Sbjct 14806157 AATGTTATAATCCG-CAAG---CGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGA 14806102 Query 38191 GGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA 38250 | | |||| || | |||| ||||| ||||| ||| || || ||||| | | Sbjct 14806101 GTCTCTGTTAGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAA 14806042 Query 38251 CAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATA 38310 || | | || || ||||||| ||||| |||||||| || | || || || |||| Sbjct 14806041 TGGTGTATGAGCTCTCGACTTCTAGGGTAATGGTTTTACCAGTAAGTGTCTTGACAAATA 14805982 Query 38311 TCTGCAT 38317 ||||||| Sbjct 14805981 TCTGCAT 14805975 >seq4 Length=23266485 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | |||||| || ||||| || || ||||| |||| Sbjct 22703201 ACCACCACGAAGACGAAGGACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGC 22703260 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| |||| || | |||||||||||| || |||| ||||||||||| | || Sbjct 22703261 CAGAGTACGTCCGTCTTCGAGTTGTTTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGG 22703320 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || ||| ||||| | || ||||| |||||| Sbjct 22703321 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGGATGATTCAAC 22703380 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || || || | |||||||||||| |||||||| ||| Sbjct 22703381 CTCGAGAGTGATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTTT 22703432 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||| || ||||| ||||| || | ||| || | || |||| |||| Sbjct 5738665 TGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCTAAAGTCCGACCATCCTCTAGTTGT 5738606 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||||| ||| ||||| | ||||| || |||| ||||| ||||| ||| || Sbjct 5738605 TTTCCGGTAAAGATTAGCCTCTGTTGGTCCAGAGGGATTCCTTCCTTGTCTTGAATCTTC 5738546 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| | || | | ||| ||| || |||||||||| |||||||||||||| || Sbjct 5738545 GCCTTGATGTTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTA 5738486 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||||||||| Sbjct 5738485 AGCGTCTTGACAAATATCTGCAT 5738463 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || || || ||||| || || ||||| || | Sbjct 5744575 TACCACCTCTCAACCTGAGAACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCG 5744516 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| || ||||| ||||| | |||||| || | | Sbjct 5744515 CAAGAGTACAACCATCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAG 5744456 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| || ||| || || | | |||||| ||| |||| Sbjct 5744455 GGATTCCTTCTTTATCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAA 5744396 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| ||||| ||||||| || | |||||||| || || ||||| Sbjct 5744395 CTTCTAGGGTAATGATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 >seq8 Length=40886855 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | | ||| | |||||||||||||| ||||| || || |||||||| Sbjct 1188617 TTTCCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCC 1188676 Query 38148 GACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 | ||| | | || | || || | ||| || ||||| || || || | || ||||| | Sbjct 1188677 G-CAAGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGG 1188735 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | ||||| |||||| ||| || ||||||||| | | || ||| || || Sbjct 1188736 AGGAATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTC 1188795 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| |||||||| || | ||| ||||||||||||||||| Sbjct 1188796 CACCTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACGAATATCTGCAT 1188846 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| || | ||||| || | || |||||| || |||||||| || | Sbjct 1190055 TACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTC-G 1190113 Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | || | || || | ||| || || || || || || | ||| ||||| | Sbjct 1190114 GCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGA 1190173 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| || ||| ||| ||||| | || ||| || || || Sbjct 1190174 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTCTCG 1190233 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | |||||||||||||| ||||| Sbjct 1190234 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 >seq1 Length=25238555 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || || | ||||||||||| || || || || || ||||||||| Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | |||| |||||||||||||| ||||| || | |||||||| || | || Sbjct 18011411 AGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGA 18011352 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || |||||||| | | || ||| | |||||| Sbjct 18011351 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAACC 18011292 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||| | ||||||||| || |||||||| Sbjct 18011291 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 18011245 >seq5 Length=22804910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | |||||| || || || || || ||||| |||| Sbjct 22133805 ACCACCACGAAGACGAAGGACAAGATGAAGCGTTGATTCTTTCTGGATGTTGTAGTCAGC 22133746 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| |||| || | ||||||||| || || |||| ||||| || || | || Sbjct 22133745 GAGAGTACGTCCGTCTTCGAGTTGTTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGG 22133686 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || || ||||| | || |||||| |||||| Sbjct 22133685 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGATGATTCAAC 22133626 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| | |||||||||||| |||||||| Sbjct 22133625 CTCGAGAGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 22133578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334833834084701