Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 241 2e-58 seq7 123 3e-23 >seq5 Length=22804910 Score = 241 bits (266), Expect = 2e-58 Identities = 596/889 (67%), Gaps = 14/889 (2%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||| || || ||||| || | ||||| ||||||||||| || |||| ||| || Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| |||| || ||||| | ||| ||| | ||| | | || | || | | Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 ||| ||||| || ||||| || ||||| |||||| ||||| |||||| || | | Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | ||||| || || | ||| ||| ||||| ||||| || | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 32609 AGATCTTACTGTTTCTTCACTCGG-TGGATAC--AATAAATGTTTAAACATCAAACATGC 32665 ||| | ||| |||| ||||| | | | ||| || | | || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 |||||| ||||||| ||| |||||||| ||||||||||| || || || | || || Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| || ||||| || |||||||| || || || || || ||||| ||||| || || Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTCATGTATCCACT 32844 ||| || || || || | | | || | | | | | ||| ||||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-CATCGATCCAAG 2412494 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 | |||||| || ||||| | |||||||| || || || || ||| || |||| Sbjct 2412495 TCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAATAGAT 2412554 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 | | |||| || ||||||| | || || || | | |||| |||||| || |||| Sbjct 2412555 GATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCTGAAT 2412614 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATCTGTACT 33023 | || || ||||| || ||||| ||||||||||| ||| | || |||| | ||||| Sbjct 2412615 GGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCA-CGCGCTTCGGAGACTTGTACA 2412673 Query 33024 TCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 |||| ||| |||||| || | ||||| || ||||||||| || || || || Sbjct 2412674 TCTG-ACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAAGAA 2412732 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGA 33141 || | ||| ||||| || || | ||| || | ||| || || | ||| ||| | Sbjct 2412733 AGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGGT 2412791 Query 33142 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33201 | |||| || | ||| |||||||| ||||||| |||||||| || || || || |||| Sbjct 2412792 TGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGTACA 2412851 Query 33202 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 | | |||||| | | || ||||||||||| ||| ||||| | ||| Sbjct 2412852 TTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCTGTCTGG 2412900 >seq7 Length=29178675 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || | |||| | || |||| ||| |||| |||||| Sbjct 28704346 TCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACC 28704287 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||| ||||| || || ||||| |||||| | ||||| |||||| ||| || Sbjct 28704286 ATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGA 28704227 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || |||| || ||| || ||| ||||||||||| || Sbjct 28704226 AACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATAT 28704167 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| |||||||||||| |||| || ||||| |||||| Sbjct 28704166 TCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||||| | || ||||| || |||||||||||| | | || | || || Sbjct 28704028 GTTCCTGAGTTAAACAGAGTCGGAGACGCATGAGTAAACCATCTCTGTGACATTAAATGA 28703969 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||| || | ||| || || ||||| | ||| || || || || | || | ||| || Sbjct 28703968 TACGTTTCCACAGCGGAATCAATATCTTCCTTG-TGTATACCAACAGATACTCTCATCAA 28703910 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGT-TTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||| ||||| |||||||| | ||| | | | |||||||| | ||| ||| | || | Sbjct 28703909 CATGTGTTGAGGCCTTTCAAC-AACTTTTCCTCTGATTTTCAAAAGGTAAGATCTCTCAA 28703851 Query 63645 AAGTTTTAAAACCAAAATA 63663 || || || ||||| || Sbjct 28703850 GCGTCTTGAATCCAAAGTA 28703832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633412042571600