Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq3 432 4e-116 seq20831 403 2e-107 seq7 192 7e-44 seq6 91.5 2e-13 >seq3 Length=27950219 Score = 432 bits (478), Expect = 4e-116 Identities = 707/1016 (70%), Gaps = 7/1016 (1%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | || ||||||| ||||| || |||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || | ||| | || || | || ||| Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTT---GAGGGTGCTAATTTT 167476 || || |||||||| || || ||||| ||||| | | || ||| |||||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTAGAAGGTTGCAATTTT 12152726 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 || || || | || ||||||||| | | | | |||||| | | |||| ||| Sbjct 12152725 TAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGG 12152666 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 |||| ||| | || | ||||| | | ||||| || | || || |||| ||||||| Sbjct 12152665 GGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTT 12152606 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || ||| |||| || ||||| | ||| | |||||| | || |||||||| | | Sbjct 12152605 GTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCT 12152546 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 || || | || ||||| ||||| || || || |||||||| || ||||| ||| Sbjct 12152545 CGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTT 12152486 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || | ||| | || || ||||| || || || || ||||||||||||| || ||| Sbjct 12152485 GTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 12152426 Query 167777 GGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTC 167836 ||||| || || |||||| ||||| | || || |||||||| |||| |||| | Sbjct 12152425 GGTGTAGCGGCTATATTTCGATTCATCCTTTTTTCCAAGGGTTTC-ATAATTGGATATTG 12152367 Query 167837 AACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATC 167896 ||||| || |||||||||||||| | ||| | || |||| || |||| | || || Sbjct 12152366 AACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATT 12152307 Query 167897 CATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAA 167956 ||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 12152306 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 12152247 Query 167957 GCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGG 168016 || ||| | | ||||| | || ||||||||||| |||||||| |||||||| || ||| Sbjct 12152246 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 12152187 Query 168017 TCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTC 168076 || || | ||||| ||||||| |||||| |||||||| || |||| |||| | || Sbjct 12152186 TCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTT 12152127 Query 168077 GTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTT 168136 || | || | || | |||| ||| || |||| | |||| || || | || || Sbjct 12152126 GTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTA 12152067 Query 168137 CGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACT 168196 |||| |||||||| || || |||||| | ||||| || ||| | | ||||| ||| Sbjct 12152066 TGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACT 12152007 Query 168197 TTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGAC 168256 ||| |||| ||||| || || | || ||||| | ||||| |||||||| | |||| Sbjct 12152006 TTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGAT 12151947 Query 168257 CAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 | || ||||||||| || |||||| || || || | ||| | || |||||||| Sbjct 12151946 AAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 168190 TGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCC 168249 ||| ||||||||||| ||||| || || | || ||||| | ||||| |||||||| | Sbjct 27467488 TGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGC 27467547 Query 168250 AGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGC 168309 ||| || || ||||||||| || ||||||| || || || | ||| | || ||||| Sbjct 27467548 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 27467607 Query 168310 TCT 168312 ||| Sbjct 27467608 TCT 27467610 >seq20831 Length=3535 Score = 403 bits (446), Expect = 2e-107 Identities = 566/787 (72%), Gaps = 8/787 (1%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 |||||| | ||| | ||| || | || |||||||| |||| |||||||| | Sbjct 785 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 726 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACC 166172 |||||| || || | ||| | ||||| | ||| || |||| ||| | || || || Sbjct 725 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||| ||||| || ||||| || || | || ||||| | || || ||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 166233 CATCATCTCTGGTGCTGTTGTCCC--CTCCTCCAACGCAATTGGTCTTCACTTCTATCCC 166290 || || || ||||| || | || || || || || |||||| | || || || || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 548 Query 166291 ATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTA 166350 ||||||||||| ||||| ||||||||||||| || ||||| ||||||| | || | Sbjct 547 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 488 Query 166351 GTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTAC 166410 || | ||||| | | || | | || ||||||||||| |||||| | || | Sbjct 487 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 428 Query 166411 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 166470 || || |||||||||||||||||| || ||||| || || ||||||||||| ||| | Sbjct 427 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 368 Query 166471 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGT 166530 || || ||| || | || || | |||||||| ||| ||||| | ||||| || || Sbjct 367 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 308 Query 166531 ATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCAC 166590 ||| ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||| Sbjct 307 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 248 Query 166591 CCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCG-GCAATGCA 166649 || || || ||| | |||||||| ||||||||||| || || ||| | | | || ||||| Sbjct 247 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC-CTTATTTAGTGCTATGCA 189 Query 166650 CGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACT 166708 || | || |||| || | | | || | || ||||| |||| ||| ||| || Sbjct 188 TGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 130 Query 166709 ATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACT 166768 | ||||||| || || ||||||||||| || |||||||| || |||||||||||||| | Sbjct 129 AAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATT 70 Query 166769 TCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCC 166828 | || || ||||||||||||| ||| |||||||| ||||| || | || |||||| Sbjct 69 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 10 Query 166829 TCGCAGC 166835 | || || Sbjct 9 TAGCGGC 3 >seq7 Length=29178675 Score = 192 bits (212), Expect = 7e-44 Identities = 204/268 (76%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 167814 AGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAG 167873 |||||||| |||| ||||| ||||| || |||||||||||||| || ||| | || | Sbjct 25949504 AGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGG 25949446 Query 167874 GCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATG 167933 ||| || |||| | || || ||||||| ||| ||||| |||||| | | |||||||| Sbjct 25949445 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 25949386 Query 167934 GTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCA 167993 |||| ||||| || ||| || ||| | | ||||| | || ||||||||||| | Sbjct 25949385 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 25949326 Query 167994 TGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTT 168053 ||||||| |||||||| || ||||| ||||| ||||| ||||||| |||||| |||| Sbjct 25949325 TGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTT 25949266 Query 168054 GGTTGCACTTCTTTATGCTTTTCGTTCC 168081 |||| || ||||||||| | || || || Sbjct 25949265 GGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 166078 AACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCA 166137 || || |||||||| |||| |||||||| |||||||||| || | ||| | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 166138 ACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGT 166197 || | ||| | |||| ||| | || | ||||| || ||||| ||||| || ||| Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 166198 GAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCC 166257 || | || | || ||||| | ||||| ||||| || || || ||||| || | || Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC- 27053720 Query 166258 TCCTCCAAC-GCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 166302 | || || | || |||| | | || || || || |||||||||||| Sbjct 27053719 TACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567035092501600