Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 253 2e-62 seq3 100 3e-16 seq8 95.1 1e-14 seq6 95.1 1e-14 seq7 84.2 2e-11 seq4 84.2 2e-11 >seq5 Length=22804910 Score = 253 bits (280), Expect = 2e-62 Identities = 606/895 (68%), Gaps = 31/895 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || || |||||| | |||||||| ||||| ||||| |||| Sbjct 2412007 CATAACAGAAGCTTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTG 2412066 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 ||| ||| | | || | | | ||||| | | ||| ||||| | | | Sbjct 2412067 TAAACTAATCAACTCCATCCAATCAAAAGGATTACTCACACCATAC-ACTTTAC-CATAC 2412124 Query 92908 CAACTCGTACA--ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | || ||| | || ||||| || ||||| || || |||||| |||||| |||| | Sbjct 2412125 CCAAGCGCACATAACAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCA 2412184 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| ||| || || || || | || ||| |||| || |||| Sbjct 2412185 TTCATACCAACCA-ACGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAAC 2412243 Query 93025 GGCTTCTTTCAAGATTTCTATT-ACTCTACTATTTGGTGGTT----TTTGTACGACATA- 93078 || || ||| | || ||| ||| ||| | | || ||||| | | Sbjct 2412244 CGCATCG--CAAA----CAATAGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAG 2412297 Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 | |||| || || || || || || |||||||||||||||| ||| || || || || Sbjct 2412298 AGTGTAAATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTT 2412357 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 ||| |||||||| || | ||||| |||||||| ||||| || || ||| || Sbjct 2412358 AGAGAAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGA 2412417 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 |||||| || ||||||||||| || || || || || |||||||| || || || Sbjct 2412418 ACCAGAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTT-- 2412475 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | | | |||||| | | |||||| ||||| || ||| |||||| | || Sbjct 2412476 TGAGATCCATC-GATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGT 2412534 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 |||||| || ||||| | ||||| || | |||| ||||| || |||| | Sbjct 2412535 TTCGATTGCACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAG 2412594 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||||||||||| || ||||||| |||||| || || ||||||||||||||||| | Sbjct 2412595 AAGAGAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACG 2412654 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||||| | || || || || ||| | |||| |||| ||||| || || | Sbjct 2412655 CGCTTCGGAGACTTGTACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTC 2412713 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG--TTTCTCATCATCTTT 93555 | || ||||| || || ||||| | || || || || || || ||||| | || || Sbjct 2412714 CGTCAGATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTC--CGTCGTT 2412771 Query 93556 AAGCTTATCCCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG 93614 || || ||||| || | | | |||| ||| ||||| ||||||||| | ||||| || | Sbjct 2412772 GAGATTTTCCCAGTCACGGTTG-TCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATG 2412830 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 ||||||| ||||| |||||||| ||||| || | | | || ||||||||||| || Sbjct 2412831 ATGCTTCGGCTTTCTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACAT 2412885 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 12925999 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 12926056 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||| | || || Sbjct 12926057 GGGTTCAAATCCCACAGCTGTCAAAATCTTTTT 12926089 >seq3 Length=27950219 Score = 100 bits (110), Expect = 3e-16 Identities = 87/106 (82%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 13925993 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 13926050 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||| || |||||| ||| ||||||||| || ||||| | ||| Sbjct 13926051 GGGTTCAAATCCCACAGCTGTCAAATTATT-TTATAATTTATTTTG 13926095 >seq8 Length=40886855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4401789 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 4401848 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| |||||| || Sbjct 4401849 GTGGGTTCAAACCCCACTTCTGAC--ATTATTTTT 4401881 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | | |||| Sbjct 3434728 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGT 3434671 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| | |||| || || |||||| || Sbjct 3434670 GGGTTCAAATCCCACAGCTGTC-AATTCTTTTTACCATTTTTTTT 3434627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 36144620 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 36144679 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 36144680 GTGGGTTCAAATCCCACTTCTGACA 36144704 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 15744467 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 15744408 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| |||||| || Sbjct 15744407 GTGGGTTCAAACCCCACTTCTGAC--ATTATTTTT 15744375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 32833444 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 32833385 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| |||||||| ||||||| || Sbjct 32833384 GTGGGTTCAAACCCCACTTCTGACAATTT 32833356 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9480373 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9480316 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 ||| || |||||| ||| |||| |||| || | |||| ||| Sbjct 9480315 TTCAAATCCCACAGCTGTCAAA-TATTTTTTCCACTTTTATTG 9480274 >seq7 Length=29178675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GG 126318 ||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | Sbjct 6238103 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGA 6238160 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATT 126351 | |||||||||| || |||| ||||||| || Sbjct 6238161 GGGCGTGGGTTCAAATCCCATTTCTGACAATTT 6238193 >seq4 Length=23266485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | | ||||||| Sbjct 13232115 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGCAAGGGCGTGGG 13232172 Query 126328 TTCGAACCCCACACCTGACA 126347 ||| || |||||| ||| || Sbjct 13232173 TTCAAATCCCACAGCTGTCA 13232192 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 11878316 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 11878375 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 11878376 TGGGTTCAAACCCCACTTCTGACA 11878399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556667492734040