Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq8 100 2e-16 seq6 95.1 9e-15 seq3 95.1 9e-15 seq1 82.4 5e-11 >seq7 Length=29178675 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| | || || ||||| |||||| | ||| || | | Sbjct 2570841 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570900 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| | | | ||| | ||| || || ||||| || || | ||| | || | Sbjct 2570901 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 2570960 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || ||||||||||| ||||| || || ||| ||| | | |||||||| Sbjct 2570961 ACAGAGGCTCATCTTTGCTGGTAAACAGCTCGAGGATGGTCGAACCCTTGGGGATTACAA 2571020 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||| ||||| ||| |||| ||||||| |||| ||| Sbjct 2571021 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGA 2571069 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | |||||| | || || ||||| |||||| | ||| || | | Sbjct 2570613 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570672 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| | | | ||| | ||| || || ||||| || || | ||| || | Sbjct 2570673 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCGGACGA 2570732 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||| || ||||| ||||| |||||||| || ||| ||| | || |||||||| Sbjct 2570733 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGATGGTCGTACTCTTGCGGATTACAA 2570792 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || ||||| || | || | |||||||| || ||| Sbjct 2570793 CATCCAGAAGGAGTCAACTCTACACCTTGTCCTTCGTTTACGCGGTGGA 2570841 >seq8 Length=40886855 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | || || | || || |||||||||||| | || ||| | || Sbjct 1188846 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 1188787 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || || || | ||| | || Sbjct 1188786 GACACAATAGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCAG 1188727 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| || || || ||||| |||||| || ||| | || |||||||| Sbjct 1188726 CAGAGACTTATCTTCGCCGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1188667 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| ||||||||| |||| | ||| | || || ||| Sbjct 1188666 ATCCAGAAGGAATCGACTCTTCATTTGGTTCTTCGTCTTCGTGGTGGA 1188619 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || ||||| |||||| | ||| || | || Sbjct 33565084 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 33565143 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || || || | ||| ||||| Sbjct 33565144 GACACCATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 33565203 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| |||||||| || ||| ||| | || ||||| || Sbjct 33565204 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAACGCTTGCGGATTATAAC 33565263 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || || ||| |||| ||||| | |||| || Sbjct 33565264 ATTCAGAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 33565310 >seq3 Length=27950219 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || ||| | || || |||||||||||| | ||| || | || Sbjct 14805975 ATGCAGATATTTGTCAAGACACTTACTGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 14806034 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 | || | | | || |||| || ||| || || || || | ||| || || Sbjct 14806035 TACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACTAA 14806094 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| |||||||| || ||| ||| | || ||||| || Sbjct 14806095 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAACGCTTGCGGATTATAAC 14806154 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || || ||| |||| ||||| | |||| || Sbjct 14806155 ATTCATAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 14806201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| |||| ||||||||||| || | || ||| | || Sbjct 5226820 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 5226761 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | || || || |||||||| || | || ||||| Sbjct 5226760 GACACCATTGACAACGTCAAAGCCAAGATCCAAGATAAAGAAGGAATCTCTCCGGACCAA 5226701 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||||||||| || ||||| ||||| ||| ||| | || ||||||||| Sbjct 5226700 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAGGATGGTCGTACTCTTGCGGATTACAAT 5226641 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||| || ||||| Sbjct 5226640 ATCCAAAAGGAATCAACACTTCA 5226618 >seq1 Length=25238555 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || |||||||| |||| | | ||||||||| | ||||||||||| |||||||| ||| Sbjct 21980305 GACAAAGAGGGAATACCACCAGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAA 21980246 Query 21987 GAT--TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTAT 22044 ||| | | |||| || || ||||| |||||||| || || || |||||| |||| | Sbjct 21980245 GATGGTCGTACACTA--GCGGACTACAACATTCAGAAAGAGTCGACGCTTCATTTGGTTT 21980188 Query 22045 T 22045 | Sbjct 21980187 T 21980187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358003589415934