Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 1e-11 >seq5 Length=22804910 Score = 86.0 bits (94), Expect = 1e-11 Identities = 280/429 (65%), Gaps = 11/429 (3%) Strand=Plus/Minus Query 42408 TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTG 42467 ||| ||||| || |||| || ||||||||||| |||||||| || || || ||||| Sbjct 2412753 TTCATCAAACACGTACTCGCTTTCTTCGCCGCATCTGACGGAATCGTACTCGAAAACCTC 2412694 Query 42468 GCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCA 42526 || | | |||||| ||| || || || || ||||| ||| |||||||| ||||| Sbjct 2412693 GCTTCACGATTCATGTCAGATGTACAAGTCTCCGAAGCGCG-TGCATTCTACGGATTCCA 2412635 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 || || || ||||| | || || ||| |||| | || ||| |||| |||||| Sbjct 2412634 AATCGCTATTGAGAATATCCATTCAGAGATGTATTCTCTTCTTCTCGACACTTACATCAA 2412575 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| | || | | || ||| || || || ||||| || || | | || Sbjct 2412574 AGATAACAAAGAAAGAGATCATCTATTCCGTGCAATCGAAACGATTCCTTGTGTTACCAA 2412515 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| || ||||| | | |||||||| | | | ||| |||| || | | Sbjct 2412514 GAAAGCTTCATGGGCTATGACTTGGATCGATGGATCTCA---AACATTCGCTGAACGTAT 2412458 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 ||||| || | || || || || |||||||| || ||||| || || ||||| Sbjct 2412457 CGTAGCGTTCGCTTGTGTTGAAGGTATATTCTTCTCTGGTTCCTTCTGTTCGATTTTCTG 2412398 Query 42767 GCTCAAGCAGAAGGTG---TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||| ||| || ||| || ||||| || | || ||||| |||||| | ||| || Sbjct 2412397 GCTTAAG--AAACGTGGACTC-ATGCCTGGTTTAACTTTCTCTAACGAATTAATCTCAAG 2412341 Query 42824 GGACGAGGG 42832 ||||| || Sbjct 2412340 AGACGAAGG 2412332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944011384450960