Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq2 100 3e-16 >seq7 Length=29178675 Score = 111 bits (122), Expect = 1e-19 Identities = 196/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||| ||||| || || | || | || || || |||||||||||| || || Sbjct 24470811 ACCACAAACGTGAGCGAGAATGCACGTAAGAAGAGAGTATGAGGCAATGTTAAACGGTAC 24470870 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 || | ||||||||| | || | |||||||| ||||| ||||| || || | || || Sbjct 24470871 GCCAAGACCCATGTCGGCTGAACGCTGATACATTTGACATGAAAGTTCTCCATTCGCAAC 24470930 Query 20359 ATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||| || | |||| ||| || || ||||| ||||||| | || || || || Sbjct 24470931 ATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCATCAGTTTAAGATCAGCAGGATT 24470990 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAA 20474 ||| || |||| || || | || ||| | ||||| || || || | ||| || | Sbjct 24470991 CCAAGCCGACATTATAATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TAC-A 24471048 Query 20475 TGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||| ||| ||||| || ||||| || || ||||||| Sbjct 24471049 TCTA--ACAGTTGATCAAATCCTTGGCCAGTGTAATCAGCAT 24471088 >seq2 Length=28351830 Score = 100 bits (110), Expect = 3e-16 Identities = 220/330 (67%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 20187 TTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAA 20246 ||||||| | || ||||| || | || ||||| || || || |||| || | Sbjct 16614093 TTTTGTACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACA 16614034 Query 20247 CATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAAC 20306 | ||||| || || |||| | || || ||| ||||||||||| || || || | || Sbjct 16614033 CGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGAC 16613974 Query 20307 CCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATT 20366 |||| || | || | |||||||| ||||| || ||||| || || || ||||| || | Sbjct 16613973 CCATATCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCAACATAGAACT 16613914 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 | |||| ||| || || ||||| ||||||||| | || | || ||||| || Sbjct 16613913 GTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAAGCCG 16613854 Query 20427 ACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATT 20486 | | || || | | ||| | ||||| ||||| || || | | | | | || Sbjct 16613853 ATAATATAATGCGCCGATCATCAGGATTGTTTTTGATCTTGTCGATTACATCTGCGAGTT 16613794 Query 20487 GGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | ||||| || || || ||||| ||||||| Sbjct 16613793 GATCAAATCCTTGACCAGTATAATCAGCAT 16613764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441219582949640