Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5 104 3e-17 seq6 86.0 7e-12 >seq5 Length=22804910 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| ||||| | ||||| | ||| || ||||| | || |||||||| || Sbjct 2412325 GTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCATGAGTCC 2412384 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | ||||||||||| ||| || ||||| |||||||| || || || ||||| Sbjct 2412385 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACA 2412444 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 |||||||| | || ||| ||||| || Sbjct 2412445 AGCGAACGCTACGATACGTTCAGCGAA 2412471 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||||||||||||||| ||||| || || ||||| | |||||||| | Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 7695413 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | ||| |||| || || ||||| ||||| |||||||| ||| Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 10994 CACGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || || ||| | ||| ||||| | ||| | || || ||||| ||||| Sbjct 7695352 CAAGG-TGCTTTGGATTTGGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACACC 7695294 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 11112 || || | || || || | | || | ||| || ||| || ||| | || || Sbjct 7695293 AACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCCTCTCC 7695234 Query 11113 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || | |||| ||| | || ||||| |||||||| || Sbjct 7695233 GGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597146236164680