Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq3 100 3e-16 seq11221 95.1 1e-14 seq8665 95.1 1e-14 seq8 93.3 5e-14 seq7 93.3 5e-14 >seq6 Length=37079636 Score = 118 bits (130), Expect = 1e-21 Identities = 168/234 (72%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| || |||||| |||||| ||||||||||| ||||||| |||||| | Sbjct 13448130 ACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCCAAAGTCCGACC 13448071 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||| | ||| | | |||||| Sbjct 13448070 ATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTT 13448011 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 |||| ||| || || | | | | ||||| |||| ||||| || | || Sbjct 13448010 GTCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTC---TCCACCTCAAGAGT 13447954 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGCCGAATAC 42223 ||| || || || || | ||||| || || || |||| | ||| ||||| || Sbjct 13447953 GATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCA-TACCACCCCGAAGAC 13447901 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||||||||||||||| | || ||||| || || || ||||||||||| Sbjct 13447622 ACCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGC 13447563 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| | |||| || ||||||||||| ||||| || | || ||||||||| | || Sbjct 13447562 CAAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 13447503 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| ||| || | | | | || ||| ||| || Sbjct 13447502 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAAC 13447443 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| |||||||| | ||||| |||||||| ||||| Sbjct 13447442 TTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| |||||||| ||||||||| |||||||| ||||||| || || | Sbjct 13447902 ACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACC 13447843 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || | | ||||||||| | ||| | | ||||| Sbjct 13447842 ATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTT 13447783 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || ||| ||| || | ||| | | | ||||| |||| ||||| |||| | Sbjct 13447782 ATCTTGGATCTTTGCCTTCA-CGTTGTCAATAGTGTCAGAGCTC---TCCACCTCGAGAG 13447727 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || | ||||| || ||||||||||| Sbjct 13447726 TAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || ||||||||||||||| | || ||| || || |||||||| || || Sbjct 19969988 ACCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGC 19970047 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| || || ||||| || ||||| || | || |||||||| | || Sbjct 19970048 CAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGG 19970107 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||| |||||| |||||| |||| ||| | | | |||||| ||| | Sbjct 19970108 AATACCCTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAA 19970166 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||||| || || || | ||||| |||||||| ||||| Sbjct 19970167 CTTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || ||||| || ||||||||||| |||| || ||| | Sbjct 13447154 ACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCC 13447095 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||||||||||| || | || |||||| || | || | | ||||| Sbjct 13447094 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTT 13447035 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | || | | | | | | ||| || |||||| |||| |||| Sbjct 13447034 ATCC-TGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGA 13446976 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || || || || |||||||| ||||| Sbjct 13446975 TTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||||| ||| || | || || ||||| ||||||||||| Sbjct 19969568 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 19969627 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | ||| | | ||||||||| ||| || |||| | Sbjct 19969628 GATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATT 19969687 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | |||||||| || || || || ||||| Sbjct 19969688 GTCAATTGTGTCAGAGCTC---TCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTT 19969744 Query 42194 TACAAAGATTTGCAT 42208 || || || ||||| Sbjct 19969745 CACGAAAATCTGCAT 19969759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||| || | || |||||| ||||| ||||| || || | ||||| | Sbjct 19969772 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACC 19969831 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || ||||| ||||||||||| | || | | || || Sbjct 19969832 ATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTT 19969891 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || |||| ||| | | | ||||| |||| || || |||| | Sbjct 19969892 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCTGAGCTC---TCGACCTCGAGGG 19969947 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || | ||||| || ||||| ||||| Sbjct 19969948 TAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| |||||||| ||||| || || | || || ||||||||||||||||| Sbjct 13448334 CTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCCTCAAGCTGCTTACCAGCGAA 13448275 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || ||||||||||| | ||| | | ||||| ||| ||| || Sbjct 13448274 GATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGGATCTT 13448227 >seq3 Length=27950219 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||||| ||||| || | || ||||||||| || ||||||||||| Sbjct 5226821 ACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGC 5226880 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||| ||||| || || || || | || ||||| | || Sbjct 5226881 CAAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGG 5226940 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| ||| || |||| | | || |||||| ||| || Sbjct 5226941 GATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGAC 5227000 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| |||||||| || || || || ||||||||||| Sbjct 5227001 CTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | ||| | ||| | ||| |||||| || || || || ||||| Sbjct 16879382 ACCACCTCCGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCAGC 16879323 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | || || ||||||||||| ||||||||||||| ||||| ||| | ||| Sbjct 16879322 GAGTGTCCTTCCATCTTCAAGCTGCTTACCGGCGAATATGAGTCTCTGCTCGTCCGGTGG 16879263 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| || |||| ||| | | | |||||| ||| | Sbjct 16879262 GATTCATTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATAGTGTCGAAGCTTTCAA 16879204 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || ||||| ||||| | | ||||| ||||| || ||||| Sbjct 16879203 CTTCGAGGGTAATGGTCTTGCCTATCAAAGTCTTCACAAAAATCTGCAT 16879155 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| ||||||||||| || ||||| || | || || ||||| ||||||||||| Sbjct 5226333 CTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAA 5226392 Query 42077 TATGAGTCGCTGCTGGTC 42094 ||| |||| ||| ||||| Sbjct 5226393 TATAAGTCTCTGTTGGTC 5226410 >seq11221 Length=395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 252 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 311 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 312 TACTACCGAGGACTG 326 >seq8665 Length=549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 217 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 276 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 277 TACTACCGAGGA 288 >seq8 Length=40886855 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || || | ||||| ||||| || |||||| || |||||||| || || Sbjct 1190056 ACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGC 1190115 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||||| | || || || |||||||||||||| || |||| ||||| || | || Sbjct 1190116 AAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGG 1190175 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| ||| || | | | | ||||| |||| || Sbjct 1190176 AATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTC---TC 1190232 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || ||||| || || || || || || || || |||||||| Sbjct 1190233 GACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| || | || | |||| ||| || || || |||||||| || ||||||| | Sbjct 1189840 ACGCAAGACAAGGTGGAGTGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTCCTTCC 1189899 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||||||||| || |||| ||||| || | || | | ||| || Sbjct 1189900 ATCTTCAAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTT 1189959 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | || ||| ||| || || | || || Sbjct 1189960 GTCCTGGATCTTAGCCTTGACATTATCAATAGTATCGGAGCTTTCAACCTCAAGAGTAAT 1190019 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || | ||||| |||||||||||||| Sbjct 1190020 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 1190055 >seq7 Length=29178675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| ||||| | ||||||||||| || ||||| |||||||||||||| | Sbjct 2571068 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCA 2571009 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| |||||||| || ||||| | ||| | ||| | || Sbjct 2571008 AGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGG 2570949 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTC---GCTCGATTC 42157 | | ||||| || ||| || |||| ||||| || | |||| |||| || Sbjct 2570948 ATCCCTTCCTTATCTTGGATCTTCGCCTTGA-CGTCGTCAATGCTGTCTGAGCTC---TC 2570893 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | || || ||||| || || || || || ||||| ||||||||| Sbjct 2570892 AACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543024230466640