Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq3 100 3e-16
seq11221 95.1 1e-14
seq8665 95.1 1e-14
seq8 93.3 5e-14
seq7 93.3 5e-14
>seq6
Length=37079636
Score = 118 bits (130), Expect = 1e-21
Identities = 168/234 (72%), Gaps = 7/234 (3%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||||||||| || |||||| |||||| ||||||||||| ||||||| |||||| |
Sbjct 13448130 ACGCAACACCAGGTGTAATGTGGACTCCTTCTGAATATTGTAGTCAGCCAAAGTCCGACC 13448071
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || ||||| ||||||||||| | ||| | | ||||||
Sbjct 13448070 ATCCTCAAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTT 13448011
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169
|||| ||| || || | | | | ||||| |||| ||||| || | ||
Sbjct 13448010 GTCCTGGATCTTAGCCTTCACATTGTCAATTGTGTCTGAGCTC---TCCACCTCAAGAGT 13447954
Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCACGCCGAATAC 42223
||| || || || || | ||||| || || || |||| | ||| ||||| ||
Sbjct 13447953 GATTGTCTTCCCGGTCAAGGTCTTAACGAAAATCTGCA-TACCACCCCGAAGAC 13447901
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || | || ||||||||||||||| | || ||||| || || || |||||||||||
Sbjct 13447622 ACCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGC 13447563
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| ||| | |||| || ||||||||||| ||||| || | || ||||||||| | ||
Sbjct 13447562 CAAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 13447503
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||| ||||| ||| ||| || | | | | || ||| ||| ||
Sbjct 13447502 AATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAAC 13447443
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || ||||| |||||||| | ||||| |||||||| |||||
Sbjct 13447442 TTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395
Score = 107 bits (118), Expect = 2e-18
Identities = 158/220 (72%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||||||||| |||||||| ||||||||| |||||||| ||||||| || || |
Sbjct 13447902 ACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCAGCCAAGGTACGACC 13447843
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || || | | ||||||||| | ||| | | |||||
Sbjct 13447842 ATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGAATACCTTCCTT 13447783
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168
|| ||| ||| || | ||| | | | ||||| |||| ||||| |||| |
Sbjct 13447782 ATCTTGGATCTTTGCCTTCA-CGTTGTCAATAGTGTCAGAGCTC---TCCACCTCGAGAG 13447727
Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| ||||| || || || | ||||| || |||||||||||
Sbjct 13447726 TAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| || | || ||||||||||||||| | || ||| || || |||||||| || ||
Sbjct 19969988 ACCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGC 19970047
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|||||| | |||| || || ||||| || ||||| || | || |||||||| | ||
Sbjct 19970048 CAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGG 19970107
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | ||| |||||| |||||| |||| ||| | | | |||||| ||| |
Sbjct 19970108 AATACCCTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAA 19970166
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | |||||||| || || || | ||||| |||||||| |||||
Sbjct 19970167 CTTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||||||||| || | || ||||| || ||||||||||| |||| || ||| |
Sbjct 13447154 ACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCC 13447095
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | |||||||||||||| || | || |||||| || | || | | |||||
Sbjct 13447094 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTT 13447035
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| | || | || | | | | | | ||| || |||||| |||| ||||
Sbjct 13447034 ATCC-TGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGA 13446976
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || || || || || |||||||| |||||
Sbjct 13446975 TTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| ||||||| ||| || | || || ||||| |||||||||||
Sbjct 19969568 CTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAA 19969627
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| || ||||||||||| | ||| | | ||||||||| ||| || |||| |
Sbjct 19969628 GATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATT 19969687
Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193
| | ||||| |||| || || || | |||||||| || || || || |||||
Sbjct 19969688 GTCAATTGTGTCAGAGCTC---TCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTT 19969744
Query 42194 TACAAAGATTTGCAT 42208
|| || || |||||
Sbjct 19969745 CACGAAAATCTGCAT 19969759
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| ||||| || | || |||||| ||||| ||||| || || | ||||| |
Sbjct 19969772 ACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACC 19969831
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| ||||| || ||||| ||||||||||| | || | | || ||
Sbjct 19969832 ATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTT 19969891
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168
|||| ||| || |||| ||| | | | ||||| |||| || || |||| |
Sbjct 19969892 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCTGAGCTC---TCGACCTCGAGGG 19969947
Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| ||||| || || || | ||||| || ||||| |||||
Sbjct 19969948 TAATGGTCTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987
Score = 82.4 bits (90), Expect = 8e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || ||||| |||||||| ||||| || || | || || |||||||||||||||||
Sbjct 13448334 CTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCCTCAAGCTGCTTACCAGCGAA 13448275
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
|| || ||||||||||| | ||| | | ||||| ||| ||| ||
Sbjct 13448274 GATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGGATCTT 13448227
>seq3
Length=27950219
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||||||||| ||||||| ||||| || | || ||||||||| || |||||||||||
Sbjct 5226821 ACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGC 5226880
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || ||||| ||||| || || || || | || ||||| | ||
Sbjct 5226881 CAAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGG 5226940
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | || ||||| ||| || |||| | | || |||||| ||| ||
Sbjct 5226941 GATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAGCTTTCGAC 5227000
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | || ||||| |||||||| || || || || |||||||||||
Sbjct 5227001 CTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| | ||| | ||| | ||| | ||| |||||| || || || || |||||
Sbjct 16879382 ACCACCTCCGAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTATAGTCAGC 16879323
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| |||| | || || ||||||||||| ||||||||||||| ||||| ||| | |||
Sbjct 16879322 GAGTGTCCTTCCATCTTCAAGCTGCTTACCGGCGAATATGAGTCTCTGCTCGTCCGGTGG 16879263
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | ||||||||| ||| || |||| ||| | | | |||||| ||| |
Sbjct 16879262 GATTCATTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATAGTGTCGAAGCTTTCAA 16879204
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| |||| || ||||| ||||| | | ||||| ||||| || |||||
Sbjct 16879203 CTTCGAGGGTAATGGTCTTGCCTATCAAAGTCTTCACAAAAATCTGCAT 16879155
Score = 82.4 bits (90), Expect = 8e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| ||||||||||| || ||||| || | || || ||||| |||||||||||
Sbjct 5226333 CTCCTTTTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCGAGCTGTTTACCAGCGAA 5226392
Query 42077 TATGAGTCGCTGCTGGTC 42094
||| |||| ||| |||||
Sbjct 5226393 TATAAGTCTCTGTTGGTC 5226410
>seq11221
Length=395
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 252 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 311
Query 57067 TACTACCGAGGATTG 57081
|||||||||||| ||
Sbjct 312 TACTACCGAGGACTG 326
>seq8665
Length=549
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 217 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 276
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 277 TACTACCGAGGA 288
>seq8
Length=40886855
Score = 93.3 bits (102), Expect = 5e-14
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || || | ||||| ||||| || |||||| || |||||||| || ||
Sbjct 1190056 ACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGC 1190115
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||||| | || || || |||||||||||||| || |||| ||||| || | ||
Sbjct 1190116 AAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGG 1190175
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157
| | ||||||||| ||| ||| || | | | | ||||| |||| ||
Sbjct 1190176 AATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTC---TC 1190232
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||| || ||||| || || || || || || || || ||||||||
Sbjct 1190233 GACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
|||||| || | || | |||| ||| || || || |||||||| || ||||||| |
Sbjct 1189840 ACGCAAGACAAGGTGGAGTGTGGACTCTTTCTGGATGTTGTAATCCGCAAGAGTCCTTCC 1189899
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || ||||||||||||||||| || |||| ||||| || | || | | ||| ||
Sbjct 1189900 ATCTTCAAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGAATTCCCTCTTT 1189959
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || |||| | | | || ||| ||| || || | || ||
Sbjct 1189960 GTCCTGGATCTTAGCCTTGACATTATCAATAGTATCGGAGCTTTCAACCTCAAGAGTAAT 1190019
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || || | ||||| ||||||||||||||
Sbjct 1190020 GGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 1190055
>seq7
Length=29178675
Score = 93.3 bits (102), Expect = 5e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| ||||| | ||||||||||| || ||||| |||||||||||||| |
Sbjct 2571068 CCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCA 2571009
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || ||||| |||||||| || ||||| | ||| | ||| | ||
Sbjct 2571008 AGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGG 2570949
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTC---GCTCGATTC 42157
| | ||||| || ||| || |||| ||||| || | |||| |||| ||
Sbjct 2570948 ATCCCTTCCTTATCTTGGATCTTCGCCTTGA-CGTCGTCAATGCTGTCTGAGCTC---TC 2570893
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || | || || ||||| || || || || || ||||| |||||||||
Sbjct 2570892 AACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543024230466640
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