Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 seq6 100 2e-16 seq5 98.7 7e-16 seq3 91.5 1e-13 seq4 89.7 4e-13 seq8 87.8 1e-12 >seq1 Length=25238555 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||| || ||| |||||||| || || ||||| || ||| ||||||| | Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||||||||||||||| || || | |||||||| |||||||| |||| Sbjct 18011411 AGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGA 18011352 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| || ||| ||| | || || || || | ||| || Sbjct 18011351 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAACC 18011292 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| ||| || || || || || || ||||| ||||| || ||||| Sbjct 18011291 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 18011245 >seq6 Length=37079636 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || |||||||| ||| ||||| || ||||||||||| | | |||| ||||| Sbjct 13447606 AACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCCAAAGTTCTGCCGTCT 13447547 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || || ||| | ||||| | ||| ||||| ||||| || || ||||| Sbjct 13447546 TCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCCTCTTTGTCT 13447487 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 || ||||| || ||| | || ||||||||| |||| || || || |||||||| Sbjct 13447486 TGGATCTTTGC-CTTCACATTATCAATAGTATCGGAGCTTTCAACTTCCAAAGTAATGGT 13447428 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || ||||| || |||||| Sbjct 13447427 CTTGCCCGTCAAGGTCTTGACAAAGATCTGCATA 13447394 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | || || ||||| ||||| || || || || ||||| ||||| Sbjct 33565310 CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCA 33565251 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | |||||| ||||| | || | | ||||||||| || Sbjct 33565250 AGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGG 33565191 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || || || | || || || || | || || Sbjct 33565190 ATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACT 33565131 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| |||||| |||||||| || || ||||| ||||| || |||||| Sbjct 33565130 TCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCATA 33565083 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | || || || ||||| || || || || ||||||||||| Sbjct 33565082 CCTCCTCTCAACCTGAGGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCA 33565023 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| | || || | || || || || | |||| | ||| ||||| || Sbjct 33565022 AGAGTTCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGG 33564963 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||||| ||| ||| | || || || || | || || Sbjct 33564962 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACT 33564903 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| |||||| |||||||| || || || || ||||| || | ||| Sbjct 33564902 TCTAGGGTAATCGTTTTACCAGTAAGTGTCTTGACAAATATCTACAT 33564856 >seq5 Length=22804910 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || ||||| || |||||||| || |||| | | ||||||| | ||| Sbjct 22133781 ATGAAGCGTTGATTCTTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTG 22133722 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | || ||||| || ||||| ||| |||||||||||||| || || Sbjct 22133721 TTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 22133662 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || ||||| ||| || || | || || || || || || Sbjct 22133661 GGCTTTGACATTGTCGATGGTATCTGATGATTCAACCTCGAGAGTGATTGTCTTCCCCGT 22133602 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 22133601 TAGGGTTTTCACGAAGATCTGCAT 22133578 >seq3 Length=27950219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 14942 CATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGT 15001 |||| | ||||||| || | || || ||||| ||||| || || || || ||||| | Sbjct 14806209 CATGCATCCCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTATGAATGTTAT 14806150 Query 15002 AATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGT 15061 |||| || ||| | || || | |||||| ||||| | || | | ||||| || Sbjct 14806149 AATCCGCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTAGT 14806090 Query 15062 CGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT 15121 | || |||||||||||||| ||| || ||| ||| | || || || | Sbjct 14806089 CCGGAGGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTATGAGC 14806030 Query 15122 TTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||| ||||||||||||||| || || || || ||||| || ||||| Sbjct 14806029 TCTCGACTTCTAGGGTAATGGTTTTACCAGTAAGTGTCTTGACAAATATCTGCAT 14805975 >seq4 Length=23266485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| || ||| | | ||||||| | ||| Sbjct 22703225 ATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCGTCTTCGAGTTG 22703284 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || || || ||||| || ||| |||||||||||||| || || Sbjct 22703285 TTTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTT 22703344 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || |||||| ||| || || | || || || || ||||| Sbjct 22703345 GGCCTTGACATTGTCGATTGTATCGGATGATTCAACCTCGAGAGTGATCGTCTTCCCTGT 22703404 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 22703405 TAGGGTTTTCACGAAGATCTGCATCTTTG 22703433 >seq8 Length=40886855 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || || || ||||||||||| ||| | || | ||||| Sbjct 1188637 AACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTC 1188696 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || | | ||| || || ||||| ||||||||||| Sbjct 1188697 AAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTG 1188756 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | ||||| || || | || || || | |||||||||||| Sbjct 1188757 AATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTT 1188816 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || || || || || |||||| Sbjct 1188817 ACCAGTGAGGGTCTTCACGAATATCTGCATA 1188847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357271037438735