Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq1 116 3e-21 seq3 111 1e-19 seq5 104 2e-17 seq4 100 3e-16 seq7 91.5 1e-13 >seq6 Length=37079636 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | || || ||||||||||| |||||||| ||||| Sbjct 13447168 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCC 13447109 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || ||| | ||||||| ||||| ||||| Sbjct 13447108 GCCAAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGA 13447049 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| ||||| ||||| || ||| | || | || || ||| || Sbjct 13447048 GGAATCCCTTCCTTATCCTGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCC 13446989 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| | || || ||||| |||||||| ||||| || |||||| Sbjct 13446988 ACCTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 13446938 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| ||||| || || || ||||| |||||||| ||||| Sbjct 13447396 ATACCACCACGAAGCCTGAGCACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCC 13447337 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | || ||||| ||| | ||||| | ||||| ||||| Sbjct 13447336 GCAAGAGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGA 13447277 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||||||||| || ||| | || | || | |||||| ||| ||| Sbjct 13447276 GGAATACCTTCCTTATCTTGAATCTTAGCTTTCA-CGTTATCGATGGTGTCAGAACTCTC 13447218 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| ||||| || || | || || ||||| || ||||| Sbjct 13447217 AACCTCGAGAGTAATAGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13447167 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||||||||| || || |||||||| | ||| | ||| || Sbjct 33565293 CACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCCGCAAGCGTTCGACCATCCTC 33565234 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||||||||| || | || | || || |||||||| || || ||||| || ||||| Sbjct 33565233 AAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTG 33565174 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || |||| || | || | |||||| || ||| ||||| || |||| |||| Sbjct 33565173 AATCTTCGCCTTGA-CGTTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTT 33565115 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| ||||| || ||||| Sbjct 33565114 TACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | ||| || || || || || |||||||| || ||| Sbjct 19969986 ATACCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCG 19970045 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| ||||| ||| | ||||||| |||||||||||| Sbjct 19970046 GCCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGA 19970105 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || ||||| || || ||||| |||| || | || | ||||||||| || Sbjct 19970106 GGAATACCCTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTC 19970164 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || ||||| | || || ||||| || ||||| Sbjct 19970165 AACTTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | |||| || || |||||||||||||| || || Sbjct 13447916 ATACCACCCCGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCA 13447857 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || ||||| || | ||||| | ||||||||||| Sbjct 13447856 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGT 13447797 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| |||||||| || ||| || | || | || | ||||| || ||| Sbjct 13447796 GGAATACCTTCCTTATCTTGGATCTTTGCCTTCA-CGTTGTCAATAGTGTCAGAGCTCTC 13447738 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || || || || | || || || || |||||||| Sbjct 13447737 CACCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || ||||| | ||| | ||| || | || Sbjct 33565058 TGGAGGGTTGATTCCTTCTGGATGTTGTAATCCGCAAGAGTTCGACCATCCTCGAGCTGC 33564999 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| | ||||||||||| || || ||||| || ||||||||||| Sbjct 33564998 TTACCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTA 33564939 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || ||||||||| || |||| |||||| || || Sbjct 33564938 GCTTTAACATTGTCAATGGTGTCTGAGCTCTCGACTTCTAGGGTAATCGTTTTACCAGTA 33564879 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || | |||| Sbjct 33564878 AGTGTCTTGACAAATATCTACATC 33564855 >seq1 Length=25238555 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| ||||||||||| || ||||| | ||||| || ||| | || || ||||| Sbjct 18011448 ATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCGAGTGTTCTTCCGTCTTCTAATTG 18011389 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||||||| | ||||| ||||| |||||||| ||||| ||||| || |||||||| || Sbjct 18011388 TTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGAATTCCTTCCTTGTCTTGAATCTT 18011329 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | ||||| ||||| || || || || || | || || || || Sbjct 18011328 CGCTTTCACATTGTCAATTGTGTCTGAAGATTCAACCTCTAGGGTTATTGTCTTCCCCGT 18011269 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| ||||| || ||||| Sbjct 18011268 TAGGGTTTTCACAAAGATCTGCAT 18011245 >seq3 Length=27950219 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || |||||||||||||||||||| ||||| | || | ||| || Sbjct 5226612 ACAAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCCGCAAGAGTACGACCATCCTCT 5226671 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | || | || || |||||||| | || |||||||||||||| Sbjct 5226672 AGCTGTTTACCGGCAAAGATAAGTCTCTGTTGGTCCGGAGAGATTCCTTCTTTATCTTGG 5226731 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | || | |||||| || ||||| ||||| || | ||||| Sbjct 5226732 ATCTTGGCTTTGA-CGTTGTCAATGGTGTCTGAGCTTTCGACCTCGAGTGTTATGGTTTT 5226790 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| ||||| ||||| |||||||| Sbjct 5226791 GCCAGTTAGGGTTTTCACAAAGATTTGCAT 5226820 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||||||||| || || |||||||| | ||| | ||| || Sbjct 14806184 CACCAAATGCAGGGTTGATTCCTTATGAATGTTATAATCCGCAAGCGTTCGACCATCCTC 14806125 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||||||||| || | || | || || | |||||| || || ||||| || ||||| Sbjct 14806124 AAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTAGTCCGGAGGGATTCCTTCCTTGTCTTG 14806065 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || ||| | || | ||||| || ||||||||| || |||| ||||| Sbjct 14806064 AATCTTAGCTTTAACATTGTCAATGGTGTATGAGCTCTCGACTTCTAGGGTAATGGTTTT 14806005 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || ||||| || |||||| Sbjct 14806004 ACCAGTAAGTGTCTTGACAAATATCTGCATC 14805974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| ||||||||||| || ||||| | ||| || || | ||| Sbjct 5226846 TGGAGAGTTGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCGAGCTGT 5226905 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | | ||| |||||||| || || |||||||| ||||| || || Sbjct 5226906 TTACCGGCAAAGATAAGCCTTTGTTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTG 5226965 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| ||||||||||| ||||| || || || | || ||||| || Sbjct 5226966 GCATTGACGTTTTCGACGGTGTCGGAGCTTTCGACCTCAAGTGTTATGGTCTTGCCCGTA 5227025 Query 45318 AGAGTTTTTACAAAAATTTGCATCGC 45343 |||||||| || || ||||||||||| Sbjct 5227026 AGAGTTTTCACGAAGATTTGCATCGC 5227051 >seq5 Length=22804910 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| ||||||||||| || ||||| || || || || || || || Sbjct 22133786 ACAAGATGAAGCGTTGATTCTTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCG 22133727 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | || || |||||||||||||| || || ||||| || ||||| Sbjct 22133726 AGTTGTTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGG 22133667 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||| || || || || || |||||||| | || || Sbjct 22133666 ATCTTGGCTTTGACATTGTCGATGGTATCTGATGATTCAACCTCGAGAGTGATTGTCTTC 22133607 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 22133606 CCCGTTAGGGTTTTCACGAAGATCTGCATC 22133577 >seq4 Length=23266485 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| |||||||||||||| ||||| || || || | || || || Sbjct 22703220 ACGAGATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCCAGAGTACGTCCGTCTTCG 22703279 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | || |||||||| || ||||| || || ||||| || ||||| Sbjct 22703280 AGTTGTTTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGG 22703339 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | || ||||| || || || |||||||| | ||| || Sbjct 22703340 ATCTTGGCCTTGACATTGTCGATTGTATCGGATGATTCAACCTCGAGAGTGATCGTCTTC 22703399 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 22703400 CCTGTTAGGGTTTTCACGAAGATCTGCATC 22703429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || || || | || | ||| || | ||| Sbjct 5744549 TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCAAGAGTACAACCATCTTCGAGCTGT 5744490 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | | ||| ||||| || || || ||||||||||||||||| || Sbjct 5744489 TTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGGATTCCTTCTTTATCTTGAATCTTC 5744430 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || ||| ||| ||||| || |||| |||| || || Sbjct 5744429 GCCTTGA-CGTTGTCAATTGTATCTGAACTCTCAACTTCTAGGGTAATGATTTTACCAGT 5744371 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| ||||||||| Sbjct 5744370 GAGTGTTTTCACAAAGATTTGCATC 5744346 >seq7 Length=29178675 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||||||||| || ||||| ||||| | | |||| | ||| || Sbjct 2571051 CACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCCCCAAGGGTTCGACCATCCTC 2570992 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||||| || || | || | | || | ||| || || || ||||| |||||||| Sbjct 2570991 GAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGAGGGATCCCTTCCTTATCTTG 2570932 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| | || | | |||| || ||| ||||| | |||| ||||| Sbjct 2570931 GATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACTTCTAAGGTAATAGTTTT 2570872 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| |||||||| Sbjct 2570871 ACCAGTGAGTGTTTTCACAAATATTTGCAT 2570842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451846292739160