Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq20831 495 5e-135 seq3 446 2e-120 seq7 192 7e-44 seq6 107 2e-18 seq2 95.1 2e-14 >seq20831 Length=3535 Score = 495 bits (548), Expect = 5e-135 Identities = 579/782 (74%), Gaps = 0/782 (0%) Strand=Plus/Plus Query 7739 GCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGA 7798 || || | |||||| || | ||||| || |||||||| ||| ||||||||||||| Sbjct 3 GCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAAT 62 Query 7799 CGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTA 7858 || ||||| || || |||||||| || |||||||| || ||||||||||| ||||| | Sbjct 63 CGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTG 122 Query 7859 TAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGC 7918 ||||| | || || ||| || |||||||| | | || | ||| ||||| | Sbjct 123 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 182 Query 7919 GAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGG 7978 ||||||||||| ||||| || | || || || || |||||||| || || | |||||| Sbjct 183 GAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGA 242 Query 7979 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCA 8038 || |||||||| || ||||||||||| || ||||| |||| ||| ||||||| |||||| Sbjct 243 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCA 302 Query 8039 GAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 8098 ||||| || ||||||||| | ||||| ||| |||||||| | || || | | ||| Sbjct 303 GAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAA 362 Query 8099 ACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCT 8158 ||||||| ||| || ||||| ||||| || ||||| ||| ||||| ||||||||||| Sbjct 363 ACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 422 Query 8159 AGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGG 8218 |||||| || ||||||||||||||||||||| || | | ||| | | ||||| Sbjct 423 AGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGT 482 Query 8219 AAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCC 8278 | | || |||| ||||||| |||||||| ||||| ||||||| || || |||||| Sbjct 483 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCC 542 Query 8279 CAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATG 8338 ||||| || || || || | ||||||||| ||||| ||||| || ||||| || || Sbjct 543 CAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATA 602 Query 8339 ATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACA 8398 || ||||| || || | || || |||| || |||||||| || || ||||| || || Sbjct 603 ATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 662 Query 8399 GGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAGCAGCGAGCAGCGTAGGAATC 8458 ||||||||||| | ||| |||| || ||| || || | | | ||||| ||| Sbjct 663 GGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATC 722 Query 8459 ATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAG 8518 |||| ||||| ||||| || | || |||||||| | ||| ||||| |||||||||| Sbjct 723 ATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAG 782 Query 8519 AA 8520 || Sbjct 783 AA 784 >seq3 Length=27950219 Score = 446 bits (494), Expect = 2e-120 Identities = 713/1016 (70%), Gaps = 7/1016 (1%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||| | |||| || ||||||||| || | ||| Sbjct 12151891 AGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGGTTTTCATGAGGCTTATCT 12151950 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | | |||||||| ||||| | |||||| || || || || || || |||| ||| ||| Sbjct 12151951 AGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATTGAAAGTC 12152010 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || | | ||| |||||||| | | | || || ||||| |||||||| || | ||| Sbjct 12152011 TCAAATTTCGAATCTTCCGCTGCACGGGTTTCCTGGGAAACGAAGTCATAGGCACATAGG 12152070 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || || || | | |||| | |||| | ||| | || | ||||| Sbjct 12152071 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGATACAAAT 12152130 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||| ||||||||| |||||| |||||| || || | ||||||| | ||||| Sbjct 12152131 AACATATAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGAATTATGACCAA 12152190 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 12152191 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 12152250 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 12152251 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 12152310 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || | | ||| | || |||||||||||||| ||||| | Sbjct 12152311 GCGCATAGCAGAGCGGCGCCGAGTACACCGACGACTCCCATCATATGAAATGGGTTCAAT 12152370 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||| || || || || || | || || | ||| || ||||| || || |||||||| Sbjct 12152371 ATCCAATTATGAAACCCTTGGA-AAAAAGGATGAATCGAAATATAGCCGCTACACCAAAA 12152429 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || || | |||| | ||||| Sbjct 12152430 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAGGACAAAAACAAAA 12152489 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 ||||| || |||||||| || ||||||||||| || || || | | || || || || Sbjct 12152490 ACAGCGATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCA-ATTGAACGGATCGAGC 12152548 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||| ||| | ||||| || |||| ||| || ||||| Sbjct 12152549 AAGTTCAAATTGACGTAACATAAAACATATTAATGCAAAAGCGCCGTAGAGAGCAACAAA 12152608 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || | | || || || | ||| ||| || ||||||| || ||||| ||||||| Sbjct 12152609 AGCCTAGAGACCGCCTAATTGACACCAACGAGTAAAATCTCTTTGTGCTTCAAGACCCCA 12152668 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | |||||| | | | | ||||||||| || | ||||| || || Sbjct 12152669 CAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAATGGCAGCGGTTTAAAA 12152728 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || ||||| ||||| || || || || Sbjct 12152729 ATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 12152788 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || |||| |||| | || | || | || ||| ||| || || | ||||| || Sbjct 12152789 TGCACCTGTGAACCAATCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCAGA 12152848 Query 7222 CCAACCAACAAAAACGAACC--TATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| |||||||| || | || | | | ||| ||||||||| | | |||||| Sbjct 12152849 CCAACCTACAAAAACAAAGCAGTACCTC-CGTAA-CCAGTCATCCATAATATCAAA 12152902 >seq7 Length=29178675 Score = 192 bits (212), Expect = 7e-44 Identities = 204/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 6494 GGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATC 6553 || ||||| | |||||||||||||| |||||| |||||| || || | |||||||| Sbjct 25949238 GGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATT 25949297 Query 6554 TGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCA 6613 || ||||| || || ||||| |||||||| ||||| || || || |||| || || | | Sbjct 25949298 TGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 25949357 Query 6614 AACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCA 6673 || || ||| ||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 25949358 AAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCA 25949417 Query 6674 CCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAAC 6733 || |||||||| || |||| || | || | | ||| || || |||||||||||||| Sbjct 25949418 CCATGAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAAT 25949477 Query 6734 GGGTTGAGCGTCCAGTTGTGGAAGCCCTG 6762 ||||| ||||| || || || || || Sbjct 25949478 GGGTTCTATGTCCAATTATGAAACCCTTG 25949506 >seq6 Length=37079636 Score = 107 bits (118), Expect = 2e-18 Identities = 163/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 8272 TGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACC 8331 |||||||||||| || || || || | || |||||| |||| ||||| || ||||| Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAAC-AATAGCTGCTGAAGTAGGAATAATGGCACC 27053733 Query 8332 AGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAAT 8391 || || || ||||| ||||| | || || |||| || | |||||| || || ||||| Sbjct 27053734 TGAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAAT 27053793 Query 8392 GTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAGCAGCGAGCAGC-- 8449 || || ||||||| ||| | ||| |||| || ||| || | || ||| || Sbjct 27053794 ATCTACTGGAGGAGTAGCAATGAATGCGAT-ATTAAA--AACGGAAGTTGCGGTCAATAA 27053850 Query 8450 -GTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTT 8496 ||||||||||||| ||||| ||||| || | || |||||||| || Sbjct 27053851 GGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTT 27053898 >seq2 Length=28351830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 10213 TCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTCAGA 10272 || || ||||||| | |||||| | ||| || ||||||| | |||| || ||| Sbjct 3660446 TCTTCTTCTTTGTGAGTCTCAATGGTAACATCAGAGGTAGGATAAGCAGCACAAGTGAGA 3660505 Query 10273 AGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTACCGTA 10332 | || || || | ||||| |||||||| ||||| || || |||||| || | Sbjct 3660506 ACAAATCCTTCAGCAATCTGTTCATCATCGAGGAAACTCTGGTCAGATTGATCAACAGAT 3660565 Query 10333 CCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAGG 10392 || || | | ||| |||||||| || ||||| | |||||| ||||| ||||| | Sbjct 3660566 CCAGACTTAACTTTACCTGCACAGCTTGAACATGAACCAGCACGGCAAGAGTAAGGCAAA 3660625 Query 10393 TCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 || || |||||||||||||| || || || | ||| Sbjct 3660626 TCGATTCCTGCTTCTTCAGCTGCGTCGAGGACGTA 3660660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621908837152240